Variant report

Variant	rs72726430
Chromosome Location	chr14:67101144-67101145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67094105..67096992-chr14:67100475..67102216,2	MCF-7	breast:

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10483790	1.00[ASN][1000 genomes]
rs17182539	1.00[ASN][1000 genomes]
rs17182546	1.00[ASN][1000 genomes]
rs17182703	0.85[AMR][1000 genomes]
rs17182773	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17182817	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17182886	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17780128	1.00[ASN][1000 genomes]
rs17780202	1.00[ASN][1000 genomes]
rs17780490	1.00[ASN][1000 genomes]
rs17780526	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1902645	1.00[ASN][1000 genomes]
rs55661543	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760399	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55979515	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980059	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56007522	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56034749	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56041119	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56078060	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56173717	1.00[ASN][1000 genomes]
rs56184700	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56289007	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56292859	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56321745	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56398638	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724512	1.00[ASN][1000 genomes]
rs72724514	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724517	1.00[ASN][1000 genomes]
rs72724518	1.00[ASN][1000 genomes]
rs72724530	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724532	1.00[ASN][1000 genomes]
rs72724545	1.00[ASN][1000 genomes]
rs72724548	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724549	1.00[ASN][1000 genomes]
rs72724551	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724552	1.00[ASN][1000 genomes]
rs72724558	1.00[ASN][1000 genomes]
rs72724563	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724564	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724569	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724570	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72724583	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724584	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724588	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72724589	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72724597	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724599	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726403	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72726406	1.00[ASN][1000 genomes]
rs72726407	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726416	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726419	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726424	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726429	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726432	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726433	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726434	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726438	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726440	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726444	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726447	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726457	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726458	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726459	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726462	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726480	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726482	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726487	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726490	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726491	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726494	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726496	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726500	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72728611	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72728617	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72728626	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72728632	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72728643	1.00[ASN][1000 genomes]
rs72728644	1.00[ASN][1000 genomes]
rs72728646	1.00[ASN][1000 genomes]
rs72728650	1.00[ASN][1000 genomes]
rs72728652	1.00[ASN][1000 genomes]
rs72728660	1.00[ASN][1000 genomes]
rs72728662	1.00[ASN][1000 genomes]
rs72728665	1.00[ASN][1000 genomes]
rs72728670	1.00[ASN][1000 genomes]
rs72728673	1.00[ASN][1000 genomes]
rs72728675	1.00[ASN][1000 genomes]
rs72728678	1.00[ASN][1000 genomes]
rs72728679	1.00[ASN][1000 genomes]
rs72728680	1.00[ASN][1000 genomes]
rs72728682	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050485	chr14:66308283-67109270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3385263	chr14:66514718-67511481	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv525460	chr14:66851185-67626594	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv2755473	chr14:66962747-67177647	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1052677	chr14:67007414-67123639	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv564954	chr14:67044103-67124785	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1048504	chr14:67053046-67120741	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046763	chr14:67053046-67123639	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1040770	chr14:67053046-67135147	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv2761841	chr14:67053058-67123651	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1046627	chr14:67059270-67120741	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1049050	chr14:67059270-67123639	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv1847812	chr14:67068957-67114998	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1051980	chr14:67076006-67140282	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv431014	chr14:67077150-67120432	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv916205	chr14:67078849-67351687	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67087000-67106800	Weak transcription	Gastric	stomach
2	chr14:67087200-67110000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:67090800-67101200	Weak transcription	Right Ventricle	heart
4	chr14:67091600-67101200	Weak transcription	Liver	Liver
5	chr14:67092000-67101200	Weak transcription	Psoas Muscle	Psoas
6	chr14:67095400-67102200	Weak transcription	Fetal Lung	lung
7	chr14:67095400-67116600	Weak transcription	Brain Substantia Nigra	brain
8	chr14:67095800-67101200	Weak transcription	Ovary	ovary
9	chr14:67095800-67112000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:67096800-67102200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:67098000-67101200	Weak transcription	Pancreas	Pancrea
12	chr14:67099800-67101600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:67101000-67101400	Enhancers	Right Atrium	heart
14	chr14:67101000-67102000	Enhancers	Left Ventricle	heart
15	chr14:67101000-67102000	Enhancers	HepG2	liver
16	chr14:67101000-67102400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links