Variant report

Variant	rs72726459
Chromosome Location	chr14:67122544-67122545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67121584..67124061-chr14:67125684..67127245,2	MCF-7	breast:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10483790	1.00[ASN][1000 genomes]
rs17182539	1.00[ASN][1000 genomes]
rs17182546	1.00[ASN][1000 genomes]
rs17182703	0.82[AMR][1000 genomes]
rs17182773	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17182817	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17182886	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17780202	1.00[ASN][1000 genomes]
rs17780490	1.00[ASN][1000 genomes]
rs17780526	1.00[ASN][1000 genomes]
rs17780682	1.00[ASN][1000 genomes]
rs55661543	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760399	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55979515	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980059	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56007522	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56034749	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56041119	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56078060	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56173717	1.00[ASN][1000 genomes]
rs56184700	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56289007	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56292859	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56321745	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56398638	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724530	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724532	1.00[ASN][1000 genomes]
rs72724545	1.00[ASN][1000 genomes]
rs72724548	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724549	1.00[ASN][1000 genomes]
rs72724551	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724552	1.00[ASN][1000 genomes]
rs72724558	1.00[ASN][1000 genomes]
rs72724563	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724564	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724569	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724570	1.00[ASN][1000 genomes]
rs72724583	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724584	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724588	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72724589	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72724597	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724599	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726403	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72726406	1.00[ASN][1000 genomes]
rs72726407	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726416	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726418	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726419	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726424	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726426	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726429	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726430	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726432	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726433	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726434	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726438	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726440	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726444	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726447	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726457	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726458	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726462	1.00[ASN][1000 genomes]
rs72726479	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726480	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726482	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726487	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726490	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726491	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726494	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726496	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726500	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72728611	1.00[ASN][1000 genomes]
rs72728617	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72728626	1.00[ASN][1000 genomes]
rs72728632	1.00[ASN][1000 genomes]
rs72728643	1.00[ASN][1000 genomes]
rs72728644	1.00[ASN][1000 genomes]
rs72728646	1.00[ASN][1000 genomes]
rs72728650	1.00[ASN][1000 genomes]
rs72728652	1.00[ASN][1000 genomes]
rs72728660	1.00[ASN][1000 genomes]
rs72728662	1.00[ASN][1000 genomes]
rs72728665	1.00[ASN][1000 genomes]
rs72728670	1.00[ASN][1000 genomes]
rs72728673	1.00[ASN][1000 genomes]
rs72728675	1.00[ASN][1000 genomes]
rs72728678	1.00[ASN][1000 genomes]
rs72728679	1.00[ASN][1000 genomes]
rs72728680	1.00[ASN][1000 genomes]
rs72728682	1.00[ASN][1000 genomes]
rs72728688	1.00[ASN][1000 genomes]
rs72728689	1.00[ASN][1000 genomes]
rs72728690	1.00[ASN][1000 genomes]
rs72728692	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385263	chr14:66514718-67511481	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv525460	chr14:66851185-67626594	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2755473	chr14:66962747-67177647	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1052677	chr14:67007414-67123639	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv564954	chr14:67044103-67124785	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1046763	chr14:67053046-67123639	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1040770	chr14:67053046-67135147	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2761841	chr14:67053058-67123651	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1049050	chr14:67059270-67123639	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1051980	chr14:67076006-67140282	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv916205	chr14:67078849-67351687	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv1834170	chr14:67103140-67527235	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv1840424	chr14:67103579-67186037	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv564955	chr14:67103579-67234710	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv2829998	chr14:67103579-67626594	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67118600-67123000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:67119800-67123600	Weak transcription	Brain Substantia Nigra	brain
3	chr14:67119800-67123800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:67121200-67123400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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