Variant report

Variant	rs56041119
Chromosome Location	chr14:67033482-67033483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67031416..67034033-chr14:67041598..67043348,2	MCF-7	breast:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs17182539	1.00[ASN][1000 genomes]
rs17182546	1.00[ASN][1000 genomes]
rs17182703	0.82[AMR][1000 genomes]
rs17182773	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17182817	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17182886	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17780128	1.00[ASN][1000 genomes]
rs17780202	1.00[ASN][1000 genomes]
rs17780490	1.00[ASN][1000 genomes]
rs17780526	1.00[ASN][1000 genomes]
rs1902645	1.00[ASN][1000 genomes]
rs55661543	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55853308	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55979515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980059	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56007522	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56034749	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56078060	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56173717	1.00[ASN][1000 genomes]
rs56184700	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56289007	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56292859	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56321745	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56398638	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722491	1.00[ASN][1000 genomes]
rs72722492	1.00[ASN][1000 genomes]
rs72722495	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724503	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724504	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724506	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724507	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724508	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724509	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724510	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724512	1.00[ASN][1000 genomes]
rs72724514	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724517	1.00[ASN][1000 genomes]
rs72724518	1.00[ASN][1000 genomes]
rs72724530	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724532	1.00[ASN][1000 genomes]
rs72724545	1.00[ASN][1000 genomes]
rs72724548	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724549	1.00[ASN][1000 genomes]
rs72724551	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724552	1.00[ASN][1000 genomes]
rs72724558	1.00[ASN][1000 genomes]
rs72724563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724564	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724569	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724570	1.00[ASN][1000 genomes]
rs72724583	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724584	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724588	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72724589	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72724597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726403	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72726406	1.00[ASN][1000 genomes]
rs72726407	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726416	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726418	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726419	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726424	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726426	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726429	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726430	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726432	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726433	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726434	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726438	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726440	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726444	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726447	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726457	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726458	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726459	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726462	1.00[ASN][1000 genomes]
rs72726479	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726480	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726482	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726487	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726490	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726491	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726494	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726496	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72726500	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72728611	1.00[ASN][1000 genomes]
rs72728617	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72728626	1.00[ASN][1000 genomes]
rs72728632	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564953	chr14:66287921-67046960	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1050485	chr14:66308283-67109270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv530775	chr14:66316836-67079049	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv530793	chr14:66317036-67078908	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv3385263	chr14:66514718-67511481	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	nsv525460	chr14:66851185-67626594	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	esv2755038	chr14:66869437-67041440	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv933170	chr14:66945507-67094868	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv2755473	chr14:66962747-67177647	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv902027	chr14:66975857-67059231	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv902028	chr14:66980652-67059231	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv902029	chr14:66983034-67059231	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1043369	chr14:66985241-67040687	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1040383	chr14:66985241-67041623	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv2761840	chr14:66985253-67041635	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv902030	chr14:67000504-67036750	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv1052677	chr14:67007414-67123639	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv902031	chr14:67015554-67059231	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67011000-67033600	Weak transcription	Psoas Muscle	Psoas
2	chr14:67025000-67041200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:67033400-67033600	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links