Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10434100	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10434128	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10434129	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10519963	0.82[EUR][1000 genomes]
rs11099692	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11931777	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12506058	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12510074	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2063553	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2063554	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2063555	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2063556	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2137330	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28505258	0.82[ASN][1000 genomes]
rs34296798	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4835513	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61569758	0.82[EUR][1000 genomes]
rs6829009	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72729936	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7686433	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149215200-149232800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:149216800-149238000	Weak transcription	Lung	lung
3	chr4:149221000-149232000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:149225000-149232000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:149226000-149232000	Weak transcription	Pancreas	Pancrea
6	chr4:149227200-149232000	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:149227200-149232000	Weak transcription	Left Ventricle	heart
8	chr4:149227400-149232000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:149227400-149232600	Weak transcription	Fetal Stomach	stomach
10	chr4:149227400-149234200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:149227400-149234600	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:149231400-149232200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr4:149231400-149232200	Enhancers	Small Intestine	intestine
14	chr4:149231400-149233200	Enhancers	Ovary	ovary
15	chr4:149231400-149233200	Enhancers	Psoas Muscle	Psoas
16	chr4:149231600-149232800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr4:149231600-149233200	Enhancers	Right Ventricle	heart

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