Variant report

Variant	rs11931777
Chromosome Location	chr4:149272583-149272584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10434100	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10434128	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10434129	0.88[EUR][1000 genomes]
rs10434130	0.97[ASN][1000 genomes]
rs10519963	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11099692	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12506058	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510074	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1512335	0.96[ASN][1000 genomes]
rs16998733	0.85[EUR][1000 genomes]
rs17024681	0.84[EUR][1000 genomes]
rs17484783	0.92[EUR][1000 genomes]
rs17484839	0.84[EUR][1000 genomes]
rs17484873	0.84[EUR][1000 genomes]
rs17485033	0.83[EUR][1000 genomes]
rs17582031	0.83[EUR][1000 genomes]
rs2048546	0.85[EUR][1000 genomes]
rs2063553	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063554	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063555	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063556	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137330	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34296798	0.90[EUR][1000 genomes]
rs4835513	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56721167	0.84[EUR][1000 genomes]
rs59941204	0.84[EUR][1000 genomes]
rs61569758	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61756947	0.84[EUR][1000 genomes]
rs61758341	0.83[EUR][1000 genomes]
rs61758351	0.83[EUR][1000 genomes]
rs61763850	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61764769	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66584597	0.83[EUR][1000 genomes]
rs6829009	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6834935	0.84[EUR][1000 genomes]
rs6840422	0.83[EUR][1000 genomes]
rs72728499	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72729936	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72729950	0.84[EUR][1000 genomes]
rs72729990	0.84[EUR][1000 genomes]
rs72729992	0.84[EUR][1000 genomes]
rs72732304	0.83[EUR][1000 genomes]
rs72732308	0.83[EUR][1000 genomes]
rs72732311	0.83[EUR][1000 genomes]
rs72953910	0.84[EUR][1000 genomes]
rs7682972	0.85[EUR][1000 genomes]
rs7686433	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7698307	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149266000-149276400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr4:149267000-149280600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:149267200-149276800	Weak transcription	Colonic Mucosa	Colon
4	chr4:149267400-149276800	Weak transcription	Liver	Liver
5	chr4:149267600-149272800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:149267600-149276600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:149267600-149276600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:149267800-149282000	Weak transcription	Right Ventricle	heart
9	chr4:149268200-149276200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:149268200-149276600	Weak transcription	Left Ventricle	heart
11	chr4:149268200-149276600	Weak transcription	Ovary	ovary
12	chr4:149268200-149276600	Weak transcription	Right Atrium	heart
13	chr4:149268200-149288000	Weak transcription	Small Intestine	intestine
14	chr4:149270400-149276400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:149270800-149276200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:149271000-149276600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr4:149271400-149276600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:149272000-149272800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr4:149272000-149280400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr4:149272000-149282000	Weak transcription	Psoas Muscle	Psoas
21	chr4:149272200-149276400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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