Variant report

Variant	rs17484783
Chromosome Location	chr4:149300401-149300402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10434100	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10434128	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs10434129	0.83[EUR][1000 genomes]
rs10519963	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11099692	0.85[EUR][1000 genomes]
rs11931777	0.92[EUR][1000 genomes]
rs11937655	0.94[ASN][1000 genomes]
rs12506058	0.92[EUR][1000 genomes]
rs12510074	0.92[EUR][1000 genomes]
rs1490453	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1512335	0.80[CEU][hapmap]
rs16998733	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs17024681	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484839	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484873	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17485033	0.93[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17582031	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2048546	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2063553	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2063554	0.92[EUR][1000 genomes]
rs2063555	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2063556	0.81[CEU][hapmap];0.92[EUR][1000 genomes]
rs2137330	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs34296798	0.85[EUR][1000 genomes]
rs4835513	0.85[EUR][1000 genomes]
rs56721167	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59941204	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61569758	0.95[EUR][1000 genomes]
rs61756947	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61758341	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61758351	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61763850	0.87[EUR][1000 genomes]
rs61764769	0.87[EUR][1000 genomes]
rs66584597	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6829009	0.83[EUR][1000 genomes]
rs6834935	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840422	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72729936	0.92[EUR][1000 genomes]
rs72729950	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72729990	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729992	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72732304	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72732308	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72732311	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72953910	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682972	0.86[EUR][1000 genomes]
rs7686433	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7688969	0.82[CHB][hapmap];0.94[ASN][1000 genomes]
rs7698307	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv880246	chr4:149287807-149311728	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
2	chr4:149281200-149300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:149292200-149315000	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:149297600-149300600	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:149297600-149304600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:149297800-149301400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:149297800-149306000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:149297800-149306000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:149297800-149306000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr4:149298000-149301400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr4:149298400-149311600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:149298600-149300600	Enhancers	Left Ventricle	heart
14	chr4:149299000-149306000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:149299000-149306800	Weak transcription	Psoas Muscle	Psoas
16	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:149299200-149301200	Weak transcription	Fetal Heart	heart
18	chr4:149299200-149306200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr4:149299200-149307000	Weak transcription	Ovary	ovary
20	chr4:149299200-149318400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:149299800-149307200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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