Variant report

Variant	rs61764769
Chromosome Location	chr4:149306224-149306225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149300581..149303429-chr4:149304550..149306545,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10434100	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10519963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099692	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11931777	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12506058	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12510074	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16998733	0.96[EUR][1000 genomes]
rs17024681	0.95[EUR][1000 genomes]
rs17484783	0.87[EUR][1000 genomes]
rs17484839	0.95[EUR][1000 genomes]
rs17484873	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17485033	0.94[EUR][1000 genomes]
rs17582031	0.94[EUR][1000 genomes]
rs2048546	0.96[EUR][1000 genomes]
rs2063553	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2063554	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2063555	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2063556	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2137330	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34296798	0.82[EUR][1000 genomes]
rs4835513	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56721167	0.95[EUR][1000 genomes]
rs59941204	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61569758	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61756947	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61758341	0.94[EUR][1000 genomes]
rs61758351	0.94[EUR][1000 genomes]
rs61763850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66584597	0.94[EUR][1000 genomes]
rs6834935	0.95[EUR][1000 genomes]
rs6840422	0.94[EUR][1000 genomes]
rs72729936	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72729990	0.95[EUR][1000 genomes]
rs72729992	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72732304	0.94[EUR][1000 genomes]
rs72732308	0.94[EUR][1000 genomes]
rs72732311	0.94[EUR][1000 genomes]
rs72953910	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7682972	0.96[EUR][1000 genomes]
rs7686433	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7698307	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv880246	chr4:149287807-149311728	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv980434	chr4:149300843-149308003	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
2	chr4:149292200-149315000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:149298400-149311600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:149299000-149306800	Weak transcription	Psoas Muscle	Psoas
6	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:149299200-149307000	Weak transcription	Ovary	ovary
8	chr4:149299200-149318400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:149299800-149307200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:149300600-149310000	Weak transcription	Left Ventricle	heart
11	chr4:149306000-149306600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr4:149306000-149307000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr4:149306200-149306400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr4:149306200-149306600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:149306200-149307400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr4:149306200-149308200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:149306200-149309800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:149306200-149316600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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