Variant report

Variant	rs4835513
Chromosome Location	chr4:149261651-149261652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10024999	0.81[CHB][hapmap]
rs10434100	0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10434128	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10434129	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519963	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11099692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931777	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12506058	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12510074	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17484783	0.85[EUR][1000 genomes]
rs2063553	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2063554	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2063555	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2063556	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2137330	0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28505258	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34296798	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61569758	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61763850	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61764769	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6829009	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728499	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72729936	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7686433	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3584816	chr4:149254670-149293317	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149235000-149266800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:149249400-149263200	Weak transcription	Right Atrium	heart
3	chr4:149249400-149271200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:149251800-149265000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:149252000-149267000	Weak transcription	Right Ventricle	heart
6	chr4:149257600-149263200	Weak transcription	Left Ventricle	heart
7	chr4:149258000-149266800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:149261600-149267000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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