Variant report

Variant	rs61758341
Chromosome Location	chr4:149339848-149339849
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10434100	0.83[EUR][1000 genomes]
rs10519963	0.86[EUR][1000 genomes]
rs11931777	0.83[EUR][1000 genomes]
rs12506058	0.83[EUR][1000 genomes]
rs12510074	0.83[EUR][1000 genomes]
rs16998733	0.95[EUR][1000 genomes]
rs17024681	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17484783	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17484839	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17484873	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17485033	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17582031	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2048546	0.95[EUR][1000 genomes]
rs2063553	0.83[EUR][1000 genomes]
rs2063554	0.83[EUR][1000 genomes]
rs2063555	0.83[EUR][1000 genomes]
rs2063556	0.83[EUR][1000 genomes]
rs2137330	0.83[EUR][1000 genomes]
rs56721167	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59941204	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61569758	0.86[EUR][1000 genomes]
rs61756947	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61758351	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61763850	0.94[EUR][1000 genomes]
rs61764769	0.94[EUR][1000 genomes]
rs66584597	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834935	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6840422	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729936	0.83[EUR][1000 genomes]
rs72729950	0.81[AMR][1000 genomes]
rs72729990	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72729992	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72732304	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72732308	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72732311	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72953910	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7682972	0.95[EUR][1000 genomes]
rs7686433	0.86[EUR][1000 genomes]
rs7698307	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149318800-149346600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:149320400-149351800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:149327000-149351000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:149327200-149341200	Weak transcription	Psoas Muscle	Psoas
6	chr4:149327200-149341800	Weak transcription	Right Atrium	heart
7	chr4:149327400-149346600	Weak transcription	Small Intestine	intestine
8	chr4:149327800-149346400	Weak transcription	Gastric	stomach
9	chr4:149327800-149346400	Weak transcription	Pancreas	Pancrea
10	chr4:149329600-149343800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:149334000-149341800	Weak transcription	Left Ventricle	heart
12	chr4:149335400-149346400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:149335400-149349200	Weak transcription	Fetal Heart	heart
14	chr4:149337600-149343800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:149338600-149354800	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:149339000-149340000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:149339000-149340800	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr4:149339000-149341400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr4:149339200-149340600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr4:149339400-149340000	Enhancers	Brain Substantia Nigra	brain
21	chr4:149339400-149342200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr4:149339400-149344000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:149339800-149340400	Enhancers	Stomach Mucosa	stomach
24	chr4:149339800-149340800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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