Variant report
| Variant | rs72728907 |
|---|---|
| Chromosome Location | chr15:53328079-53328080 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs56295439 | 0.81[EUR][1000 genomes] |
| rs68081619 | 0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72728903 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72728905 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72728906 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72728909 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72728912 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72728914 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72728928 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72728932 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72728935 | 1.00[EUR][1000 genomes] |
| rs72728937 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72728939 | 1.00[EUR][1000 genomes] |
| rs72742190 | 0.81[EUR][1000 genomes] |
| rs72742191 | 0.81[EUR][1000 genomes] |
| rs72742193 | 0.81[EUR][1000 genomes] |
| rs72742195 | 0.81[EUR][1000 genomes] |
| rs72744014 | 0.81[EUR][1000 genomes] |
| rs72744016 | 0.81[EUR][1000 genomes] |
| rs72744062 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72744066 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72744068 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8031886 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833007 | chr15:53264564-53453525 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv904221 | chr15:53279378-53434365 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3343986 | chr15:53284440-53571936 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv569429 | chr15:53301023-53329302 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv904222 | chr15:53316487-53384700 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv1037630 | chr15:53324645-53708925 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 7 | esv994129 | chr15:53325369-53328207 | Enhancers Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:53327400-53328400 | Enhancers | HepG2 | liver |
| 2 | chr15:53327800-53328200 | Flanking Active TSS | Liver | Liver |
