Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1397682	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60550863	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730184	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72730187	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730189	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730190	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730192	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730193	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730194	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72730195	1.00[EUR][1000 genomes]
rs72730196	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730197	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730199	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730200	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730201	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730202	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732103	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732104	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732106	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732107	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732111	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7659020	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7699674	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv10133	chr4:152762084-152778976	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	esv2753949	chr4:152764038-152794700	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152768000-152772000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:152771000-152771800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:152771200-152772200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: