Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1397682	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60550863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72730187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730194	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72730195	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730200	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732103	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732104	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732109	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7659020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7699674	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv10133	chr4:152762084-152778976	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	esv2753949	chr4:152764038-152794700	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152771800-152772400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:152771800-152772800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:152772000-152772400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr4:152772000-152772400	Enhancers	HMEC	breast
5	chr4:152772000-152772400	Enhancers	HSMM	muscle
6	chr4:152772000-152772600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:152772000-152772600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:152772000-152772600	Enhancers	Fetal Intestine Large	intestine
9	chr4:152772000-152772600	Bivalent Enhancer	NHDF-Ad	bronchial
10	chr4:152772000-152772600	Enhancers	NHEK	skin
11	chr4:152772200-152772400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:152772200-152772400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:152772200-152772400	Enhancers	Aorta	Aorta
14	chr4:152772200-152772600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:152772200-152772600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:152772200-152772800	Enhancers	Fetal Intestine Small	intestine
17	chr4:152772200-152773400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:152772200-152776400	Enhancers	Primary monocytes fromperipheralblood	blood

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