Variant report
| Variant | rs7699674 |
|---|---|
| Chromosome Location | chr4:152767110-152767111 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1397682 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs60550863 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72730184 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72730187 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72730189 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72730190 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72730192 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72730193 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72730194 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72730195 | 0.98[EUR][1000 genomes] |
| rs72730196 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72730197 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72730199 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72730200 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72730201 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72730202 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72732103 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72732104 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72732106 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72732107 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72732109 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72732111 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7659020 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432644 | chr4:152635395-153023402 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 2 | esv10133 | chr4:152762084-152778976 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
| 3 | esv2753949 | chr4:152764038-152794700 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:152764000-152769600 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr4:152764200-152767200 | Weak transcription | Right Ventricle | heart |
