Variant report
Variant | rs72732600 |
---|---|
Chromosome Location | chr5:36835509-36835510 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:36835501..36837986-chr5:36868760..36872023,3 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs55702678 | 0.90[EUR][1000 genomes] |
rs55712022 | 0.90[EUR][1000 genomes] |
rs55739939 | 0.90[EUR][1000 genomes] |
rs55886401 | 0.90[EUR][1000 genomes] |
rs56065778 | 0.90[EUR][1000 genomes] |
rs56272083 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56332781 | 0.90[EUR][1000 genomes] |
rs72732594 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72732601 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72734604 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72734607 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72734609 | 0.90[EUR][1000 genomes] |
rs72734610 | 0.90[EUR][1000 genomes] |
rs72734611 | 0.90[EUR][1000 genomes] |
rs72734612 | 0.86[EUR][1000 genomes] |
rs72734671 | 0.90[EUR][1000 genomes] |
rs72734672 | 0.90[EUR][1000 genomes] |
rs72734673 | 0.90[EUR][1000 genomes] |
rs72734677 | 0.90[EUR][1000 genomes] |
rs72734681 | 0.86[EUR][1000 genomes] |
rs72734682 | 0.90[EUR][1000 genomes] |
rs72734685 | 0.90[EUR][1000 genomes] |
rs72734687 | 0.90[EUR][1000 genomes] |
rs72734688 | 0.90[EUR][1000 genomes] |
rs72734697 | 0.90[EUR][1000 genomes] |
rs72734700 | 0.82[EUR][1000 genomes] |
rs72736704 | 0.90[EUR][1000 genomes] |
rs72736710 | 0.90[EUR][1000 genomes] |
rs72736712 | 0.90[EUR][1000 genomes] |
rs72736713 | 0.90[EUR][1000 genomes] |
rs72736714 | 0.90[EUR][1000 genomes] |
rs72736717 | 0.90[EUR][1000 genomes] |
rs72736721 | 0.90[EUR][1000 genomes] |
rs72736727 | 0.90[EUR][1000 genomes] |
rs72736730 | 0.90[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv492319 | chr5:36570707-37061019 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
2 | nsv525478 | chr5:36804225-37349895 | Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
3 | nsv532133 | chr5:36834932-36906436 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:36835400-36837800 | Enhancers | Ovary | ovary |