Variant report

Variant	rs72734612
Chromosome Location	chr5:36879422-36879423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36877699..36879526-chr5:36890759..36893139,2	MCF-7	breast:
2	chr5:36878820..36881398-chr5:36921398..36924147,2	K562	blood:
3	chr5:36874005..36875680-chr5:36879007..36880824,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs55702678	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55712022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55739939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55886401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56065778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56272083	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs56332781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72732594	0.86[EUR][1000 genomes]
rs72732600	0.86[EUR][1000 genomes]
rs72732601	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72734604	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72734607	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72734609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734681	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72734682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72734700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72734702	0.85[EUR][1000 genomes]
rs72736704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72736708	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72736710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72736712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72736713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72736714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72736717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72736721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72736723	0.85[EUR][1000 genomes]
rs72736727	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72736730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72736736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72736738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv532133	chr5:36834932-36906436	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36872800-36881400	Active TSS	GM12878-XiMat	blood
2	chr5:36874200-36879800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:36874400-36879800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:36874400-36880000	Active TSS	Fetal Brain Female	brain
5	chr5:36874600-36879600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:36874600-36879800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:36874800-36879600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:36874800-36879600	Active TSS	HSMMtube	muscle
9	chr5:36874800-36879800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:36874800-36879800	Active TSS	NHDF-Ad	bronchial
11	chr5:36874800-36880400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:36874800-36881000	Active TSS	K562	blood
13	chr5:36875000-36879600	Active TSS	Muscle Satellite Cultured Cells	--
14	chr5:36875000-36879800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:36875000-36879800	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr5:36875000-36880000	Active TSS	NHLF	lung
17	chr5:36875000-36880600	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr5:36875000-36881000	Active TSS	HMEC	breast
19	chr5:36875200-36879600	Active TSS	A549	lung
20	chr5:36875200-36879600	Active TSS	NHEK	skin
21	chr5:36875200-36879800	Active TSS	H1 Cell Line	embryonic stem cell
22	chr5:36875200-36879800	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr5:36875200-36879800	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr5:36875200-36879800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:36875200-36879800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:36875200-36879800	Active TSS	Fetal Intestine Large	intestine
27	chr5:36875400-36879600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:36875400-36879800	Active TSS	Stomach Smooth Muscle	stomach
29	chr5:36875400-36879800	Active TSS	Thymus	Thymus
30	chr5:36875600-36879600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr5:36875600-36880000	Active TSS	Duodenum Mucosa	Duodenum
32	chr5:36876600-36879600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr5:36876800-36879800	Active TSS	HepG2	liver
34	chr5:36877600-36879800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:36877800-36879600	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr5:36877800-36885400	Weak transcription	Spleen	Spleen
37	chr5:36878000-36879800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr5:36878200-36879800	Flanking Active TSS	Liver	Liver
39	chr5:36878200-36880200	Flanking Active TSS	Dnd41	blood
40	chr5:36878400-36879800	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr5:36878400-36880000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr5:36878400-36880000	Flanking Active TSS	HUVEC	blood vessel
43	chr5:36878400-36880200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr5:36878400-36881200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:36878600-36879800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr5:36878600-36881200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr5:36878800-36879600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr5:36878800-36879600	Active TSS	NH-A	brain
49	chr5:36878800-36879800	Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr5:36878800-36881800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links