Variant report

Variant	rs72733434
Chromosome Location	chr15:40686687-40686688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40685492..40688209-chr15:40696991..40699594,2	MCF-7	breast:
2	chr15:40685663..40687587-chr15:40688013..40690529,2	MCF-7	breast:
3	chr15:40674079..40683588-chr15:40684131..40692224,17	K562	blood:
4	chr15:40674079..40676370-chr15:40686249..40688248,2	K562	blood:
5	chr15:40681101..40682776-chr15:40686570..40689339,2	MCF-7	breast:
6	chr15:40677201..40680509-chr15:40684256..40687941,4	K562	blood:
7	chr15:40685564..40689200-chr15:40689211..40693750,5	K562	blood:

Variant related genes	Relation type
ENSG00000128928	Chromatin interaction
ENSG00000128944	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11541641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11541643	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185076	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16970653	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16970660	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2229312	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28379196	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492944	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68169695	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176592	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7177949	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72733427	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72733428	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72733437	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733442	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733444	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733445	0.90[EUR][1000 genomes]
rs72733449	0.90[EUR][1000 genomes]
rs72733450	0.90[EUR][1000 genomes]
rs72733453	0.90[EUR][1000 genomes]
rs73383135	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031994	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036457	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875767	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40676000-40689800	Weak transcription	Right Atrium	heart
2	chr15:40676000-40697400	Weak transcription	Small Intestine	intestine
3	chr15:40676200-40687200	Weak transcription	Colonic Mucosa	Colon
4	chr15:40676200-40690400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:40676200-40697200	Weak transcription	Stomach Mucosa	stomach
6	chr15:40676400-40687200	Weak transcription	Right Ventricle	heart
7	chr15:40676800-40687200	Strong transcription	H9 Cell Line	embryonic stem cell
8	chr15:40676800-40688000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:40676800-40688400	Strong transcription	Fetal Thymus	thymus
10	chr15:40677000-40686800	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:40677000-40688600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:40677200-40687400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr15:40677200-40687600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:40677200-40687600	Strong transcription	Fetal Stomach	stomach
15	chr15:40677400-40687000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr15:40677600-40687000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:40677600-40687600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:40677800-40688800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:40678000-40687400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:40678200-40688400	Strong transcription	Fetal Muscle Leg	muscle
21	chr15:40678400-40687600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:40678600-40686800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:40678600-40687600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:40678600-40687600	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:40678600-40688000	Strong transcription	Thymus	Thymus
26	chr15:40678800-40688000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:40679200-40688400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:40679400-40697400	Weak transcription	Brain Substantia Nigra	brain
29	chr15:40679800-40689800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:40679800-40690200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:40679800-40690200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:40679800-40690400	Weak transcription	Pancreas	Pancrea
33	chr15:40679800-40697200	Weak transcription	Ovary	ovary
34	chr15:40679800-40697600	Weak transcription	Esophagus	oesophagus
35	chr15:40680000-40689800	Weak transcription	Fetal Heart	heart
36	chr15:40680200-40687600	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:40680800-40687000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:40681000-40686800	Strong transcription	HSMM	muscle
39	chr15:40681400-40686800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr15:40681400-40686800	Strong transcription	Primary T cells from cord blood	blood
41	chr15:40681400-40686800	Strong transcription	Fetal Lung	lung
42	chr15:40681400-40686800	Strong transcription	Dnd41	blood
43	chr15:40681600-40687600	Strong transcription	NHEK	skin
44	chr15:40681600-40688000	Strong transcription	HMEC	breast
45	chr15:40682000-40689400	Weak transcription	Psoas Muscle	Psoas
46	chr15:40682200-40687400	Weak transcription	Gastric	stomach
47	chr15:40682200-40689000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:40682200-40690400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:40682600-40686800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:40682800-40687400	Strong transcription	Osteobl	bone

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