Variant report

Variant	rs72733449
Chromosome Location	chr15:40726458-40726459
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40725974..40727716-chr15:40749896..40752249,2	K562	blood:

Variant related genes	Relation type
ENSG00000140320	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11541641	0.90[EUR][1000 genomes]
rs11541643	0.90[EUR][1000 genomes]
rs12185076	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs16970653	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16970660	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2229312	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28379196	0.91[EUR][1000 genomes]
rs6492944	0.90[EUR][1000 genomes]
rs68169695	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7176592	0.90[EUR][1000 genomes]
rs7177949	0.90[EUR][1000 genomes]
rs72733427	0.91[EUR][1000 genomes]
rs72733428	0.90[EUR][1000 genomes]
rs72733434	0.90[EUR][1000 genomes]
rs72733437	0.90[EUR][1000 genomes]
rs72733442	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72733444	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72733445	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72733450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72733453	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73383135	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8031814	0.90[EUR][1000 genomes]
rs8031994	0.90[EUR][1000 genomes]
rs8032114	0.89[EUR][1000 genomes]
rs8036457	0.90[EUR][1000 genomes]
rs8037941	0.90[EUR][1000 genomes]
rs875767	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40705600-40727200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:40708400-40728000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:40710800-40727000	Weak transcription	Primary T cells from cord blood	blood
4	chr15:40710800-40728000	Weak transcription	Aorta	Aorta
5	chr15:40711800-40726600	Weak transcription	Thymus	Thymus
6	chr15:40714200-40726800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:40714200-40727800	Weak transcription	Brain Angular Gyrus	brain
8	chr15:40714200-40727800	Weak transcription	Esophagus	oesophagus
9	chr15:40714200-40728000	Weak transcription	Brain Substantia Nigra	brain
10	chr15:40714200-40728000	Weak transcription	Right Ventricle	heart
11	chr15:40714400-40727800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr15:40714400-40727800	Weak transcription	Right Atrium	heart
13	chr15:40714400-40728000	Weak transcription	Brain Anterior Caudate	brain
14	chr15:40719600-40727600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr15:40719600-40727800	Weak transcription	Spleen	Spleen
16	chr15:40719600-40728000	Weak transcription	Lung	lung
17	chr15:40719800-40727600	Weak transcription	Gastric	stomach
18	chr15:40723000-40727600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:40723400-40727000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:40725200-40727000	Weak transcription	K562	blood
21	chr15:40726400-40727200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:40726400-40727400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:40726400-40727800	Weak transcription	Ovary	ovary

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