Variant report
| Variant | rs72742714 |
|---|---|
| Chromosome Location | chr5:27192097-27192098 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:27191511..27196755-chr5:27216408..27219751,5 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1026764 | 1.00[ASN][1000 genomes] |
| rs12110293 | 1.00[ASN][1000 genomes] |
| rs17509120 | 1.00[ASN][1000 genomes] |
| rs17567635 | 1.00[ASN][1000 genomes] |
| rs2125762 | 1.00[ASN][1000 genomes] |
| rs34372144 | 1.00[ASN][1000 genomes] |
| rs4340884 | 1.00[ASN][1000 genomes] |
| rs4407597 | 1.00[ASN][1000 genomes] |
| rs62346496 | 1.00[ASN][1000 genomes] |
| rs62346497 | 1.00[ASN][1000 genomes] |
| rs62346498 | 1.00[ASN][1000 genomes] |
| rs62346499 | 1.00[ASN][1000 genomes] |
| rs62346500 | 1.00[ASN][1000 genomes] |
| rs62346501 | 1.00[ASN][1000 genomes] |
| rs62346502 | 1.00[ASN][1000 genomes] |
| rs62346503 | 1.00[ASN][1000 genomes] |
| rs62346557 | 1.00[ASN][1000 genomes] |
| rs67288216 | 1.00[ASN][1000 genomes] |
| rs67301485 | 1.00[ASN][1000 genomes] |
| rs72729012 | 1.00[ASN][1000 genomes] |
| rs72729014 | 1.00[ASN][1000 genomes] |
| rs72729015 | 1.00[ASN][1000 genomes] |
| rs72729016 | 1.00[ASN][1000 genomes] |
| rs72729018 | 1.00[ASN][1000 genomes] |
| rs72740672 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72744611 | 1.00[ASN][1000 genomes] |
| rs72744616 | 1.00[ASN][1000 genomes] |
| rs72744624 | 1.00[ASN][1000 genomes] |
| rs72744628 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917332 | chr5:26620698-27232713 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv868856 | chr5:26789778-27321390 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv881006 | chr5:27010686-27231314 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv3450425 | chr5:27134073-27323407 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv881286 | chr5:27135351-27770554 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 6 | nsv1025795 | chr5:27143283-27199590 | Enhancers ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 7 | nsv1017638 | chr5:27143283-27206186 | Weak transcription Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:27192000-27192400 | Enhancers | Hela-S3 | cervix |
| 2 | chr5:27192000-27192400 | Enhancers | NH-A | brain |
