Variant report

Variant	rs72744616
Chromosome Location	chr5:27223211-27223212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1026764	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509120	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567635	1.00[ASN][1000 genomes]
rs2125762	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34372144	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340884	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407597	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62346496	1.00[ASN][1000 genomes]
rs62346497	1.00[ASN][1000 genomes]
rs62346498	1.00[ASN][1000 genomes]
rs62346499	1.00[ASN][1000 genomes]
rs62346500	1.00[ASN][1000 genomes]
rs62346501	1.00[ASN][1000 genomes]
rs62346502	1.00[ASN][1000 genomes]
rs62346503	1.00[ASN][1000 genomes]
rs62346557	1.00[ASN][1000 genomes]
rs67288216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67301485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729012	1.00[ASN][1000 genomes]
rs72729014	1.00[ASN][1000 genomes]
rs72729015	1.00[ASN][1000 genomes]
rs72729016	1.00[ASN][1000 genomes]
rs72729018	1.00[ASN][1000 genomes]
rs72742714	1.00[ASN][1000 genomes]
rs72744611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72744614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72744624	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72744628	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72744629	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917332	chr5:26620698-27232713	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv868856	chr5:26789778-27321390	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv881006	chr5:27010686-27231314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3450425	chr5:27134073-27323407	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv881286	chr5:27135351-27770554	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv880298	chr5:27193573-27659111	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv880326	chr5:27193573-27743375	Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:27217400-27223800	Active TSS	K562	blood
2	chr5:27222400-27224800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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