Variant report

Variant	rs17567635
Chromosome Location	chr5:27083580-27083581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12110293	1.00[ASN][1000 genomes]
rs17509120	1.00[ASN][1000 genomes]
rs34372144	1.00[ASN][1000 genomes]
rs4407597	1.00[ASN][1000 genomes]
rs4527564	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs67288216	1.00[ASN][1000 genomes]
rs67301485	1.00[ASN][1000 genomes]
rs72742714	1.00[ASN][1000 genomes]
rs72744611	1.00[ASN][1000 genomes]
rs72744616	1.00[ASN][1000 genomes]
rs72744624	1.00[ASN][1000 genomes]
rs72744628	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917332	chr5:26620698-27232713	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv868856	chr5:26789778-27321390	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv881006	chr5:27010686-27231314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:27082000-27083800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:27082400-27083800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:27082600-27083800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:27082600-27084000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:27082600-27085400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:27082800-27085400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:27083000-27083600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:27083000-27085200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:27083200-27083800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:27083200-27083800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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