Variant report

Variant	rs72746863
Chromosome Location	chr15:59575016-59575017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59567346..59570886-chr15:59573103..59577861,8	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55654146	1.00[AFR][1000 genomes]
rs72746819	1.00[AFR][1000 genomes]
rs72746824	1.00[AFR][1000 genomes]
rs72746825	1.00[AFR][1000 genomes]
rs72746832	1.00[AFR][1000 genomes]
rs72746834	1.00[AFR][1000 genomes]
rs72746884	1.00[AFR][1000 genomes]
rs72749113	1.00[AFR][1000 genomes]
rs72749133	1.00[AFR][1000 genomes]
rs72749146	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59525200-59582000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:59544600-59582400	Weak transcription	Primary B cells from cord blood	blood
3	chr15:59547400-59587000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:59564200-59581800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:59567000-59576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:59567000-59578000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:59567000-59582400	Weak transcription	NHLF	lung
8	chr15:59567200-59582200	Weak transcription	HSMMtube	muscle
9	chr15:59567200-59582600	Weak transcription	NH-A	brain
10	chr15:59569200-59584600	Weak transcription	Right Atrium	heart
11	chr15:59569200-59586800	Weak transcription	Pancreas	Pancrea
12	chr15:59569400-59575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:59569600-59576200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:59570200-59575400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:59570400-59575400	Genic enhancers	Hela-S3	cervix
16	chr15:59570400-59575800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr15:59570600-59576200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr15:59571400-59576200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:59571400-59582000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:59571600-59582800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:59571800-59576000	Weak transcription	Esophagus	oesophagus
22	chr15:59571800-59579600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:59571800-59581800	Weak transcription	Brain Anterior Caudate	brain
24	chr15:59572000-59575200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:59572000-59575600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:59572000-59576200	Weak transcription	Left Ventricle	heart
27	chr15:59573000-59579200	Enhancers	HMEC	breast
28	chr15:59573000-59579600	Enhancers	Fetal Intestine Large	intestine
29	chr15:59573400-59582400	Weak transcription	Osteobl	bone
30	chr15:59574000-59575200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:59574200-59575200	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr15:59574200-59579200	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr15:59574400-59575600	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr15:59574400-59576000	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr15:59574400-59576200	Enhancers	Brain Hippocampus Middle	brain
36	chr15:59574400-59576400	Enhancers	Brain Cingulate Gyrus	brain
37	chr15:59574400-59577800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:59574400-59578400	Enhancers	Placenta	Placenta
39	chr15:59574400-59578800	Enhancers	Stomach Mucosa	stomach
40	chr15:59574400-59579800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:59574600-59575400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
42	chr15:59574600-59575400	Weak transcription	Liver	Liver
43	chr15:59574600-59575400	Enhancers	Lung	lung
44	chr15:59574600-59575400	Enhancers	Ovary	ovary
45	chr15:59574600-59576000	Enhancers	Spleen	Spleen
46	chr15:59574600-59576400	Enhancers	Duodenum Mucosa	Duodenum
47	chr15:59574600-59576800	Enhancers	Brain Substantia Nigra	brain
48	chr15:59574600-59577600	Enhancers	HepG2	liver
49	chr15:59574800-59575200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:59574800-59575400	Weak transcription	Adipose Nuclei	Adipose

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