Variant report

Variant	rs72746884
Chromosome Location	chr15:59608776-59608777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59608371..59610466-chr15:59663402..59665694,2	MCF-7	breast:
2	chr15:59576379..59578865-chr15:59606956..59609965,3	MCF-7	breast:
3	chr15:59605919..59608899-chr6:62197305..62198810,2	MCF-7	breast:
4	chr15:59606296..59607866-chr15:59608683..59610197,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157470	Chromatin interaction
ENSG00000157483	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55654146	1.00[AFR][1000 genomes]
rs72746819	1.00[AFR][1000 genomes]
rs72746824	1.00[AFR][1000 genomes]
rs72746825	1.00[AFR][1000 genomes]
rs72746832	1.00[AFR][1000 genomes]
rs72746834	1.00[AFR][1000 genomes]
rs72746863	1.00[AFR][1000 genomes]
rs72749113	1.00[AFR][1000 genomes]
rs72749133	1.00[AFR][1000 genomes]
rs72749146	1.00[AFR][1000 genomes]
rs72749162	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59600000-59627400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:59604400-59609200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:59604600-59609000	Enhancers	Brain Angular Gyrus	brain
4	chr15:59604800-59610200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr15:59605000-59609400	Enhancers	Brain Hippocampus Middle	brain
6	chr15:59605000-59609600	Weak transcription	Spleen	Spleen
7	chr15:59605200-59608800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr15:59605200-59609400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:59605200-59609600	Enhancers	Brain Substantia Nigra	brain
10	chr15:59605200-59610200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:59605400-59608800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr15:59605400-59609000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:59605400-59609000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr15:59605400-59609800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:59605400-59609800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:59605400-59609800	Enhancers	HSMM	muscle
17	chr15:59605400-59610200	Enhancers	Osteobl	bone
18	chr15:59605600-59609400	Enhancers	Colon Smooth Muscle	Colon
19	chr15:59605800-59608800	Enhancers	Right Ventricle	heart
20	chr15:59605800-59610000	Enhancers	NHLF	lung
21	chr15:59605800-59610600	Enhancers	NHDF-Ad	bronchial
22	chr15:59606000-59608800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr15:59606200-59608800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:59606400-59614000	Weak transcription	Fetal Intestine Small	intestine
25	chr15:59606600-59621200	Weak transcription	Fetal Kidney	kidney
26	chr15:59606800-59615600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:59606800-59621400	Weak transcription	Gastric	stomach
28	chr15:59606800-59623000	Weak transcription	Lung	lung
29	chr15:59606800-59631600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:59607000-59620200	Weak transcription	Esophagus	oesophagus
31	chr15:59607200-59609400	Weak transcription	Aorta	Aorta
32	chr15:59607200-59610600	Enhancers	Hela-S3	cervix
33	chr15:59607600-59609000	Enhancers	Brain Cingulate Gyrus	brain
34	chr15:59607600-59611000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr15:59607800-59609000	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr15:59607800-59609000	Enhancers	Fetal Brain Female	brain
37	chr15:59607800-59609600	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr15:59607800-59609800	Enhancers	NH-A	brain
39	chr15:59608000-59608800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:59608000-59608800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:59608000-59609000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:59608000-59609600	Enhancers	HSMMtube	muscle
43	chr15:59608200-59608800	Enhancers	Duodenum Mucosa	Duodenum
44	chr15:59608200-59609000	Enhancers	Brain Anterior Caudate	brain
45	chr15:59608200-59609200	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr15:59608200-59609400	Flanking Active TSS	A549	lung
47	chr15:59608400-59609000	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr15:59608400-59609000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr15:59608400-59609400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:59608400-59609400	Weak transcription	NHEK	skin

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