Variant report

Variant	rs72747029
Chromosome Location	chr1:211907983-211907984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211907855..211909919-chr1:211956188..211957955,2	K562	blood:
2	chr1:211891341..211893035-chr1:211906287..211908426,2	K562	blood:
3	chr1:211898917..211901292-chr1:211906344..211908451,2	K562	blood:
4	chr1:211907600..211909602-chr1:212100181..212103074,3	MCF-7	breast:
5	chr1:211907596..211909840-chr1:211915104..211917699,2	MCF-7	breast:

rs_ID	r²[population]
rs55917360	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs56162465	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72747028	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72747031	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72747044	0.91[ASN][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211879200-211913600	Weak transcription	Right Atrium	heart
2	chr1:211896400-211909000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:211900200-211908400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:211903800-211908600	Weak transcription	Lung	lung
5	chr1:211904600-211912600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:211904600-211913800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr1:211904800-211913400	Enhancers	Brain Substantia Nigra	brain
8	chr1:211905000-211908400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:211905400-211908400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:211905400-211910600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:211905400-211910800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:211905600-211908200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:211905600-211908600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:211905600-211910400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:211905800-211910400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:211906000-211908400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:211906400-211908600	Weak transcription	HSMMtube	muscle
18	chr1:211906800-211909200	Enhancers	Brain Hippocampus Middle	brain
19	chr1:211906800-211912400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:211907000-211908000	Weak transcription	Brain Angular Gyrus	brain
21	chr1:211907000-211920800	Weak transcription	Aorta	Aorta
22	chr1:211907200-211908000	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr1:211907200-211909200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:211907200-211909800	Enhancers	Stomach Mucosa	stomach
25	chr1:211907600-211908800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr1:211907600-211909000	Enhancers	Brain Cingulate Gyrus	brain
27	chr1:211907600-211909200	Flanking Active TSS	A549	lung
28	chr1:211907600-211909200	Bivalent Enhancer	HepG2	liver
29	chr1:211907600-211909400	Enhancers	Pancreas	Pancrea
30	chr1:211907600-211909800	Enhancers	K562	blood
31	chr1:211907800-211908200	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr1:211907800-211908600	Enhancers	Hela-S3	cervix
33	chr1:211907800-211908600	Enhancers	NHEK	skin
34	chr1:211907800-211910800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:211907800-211910800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr1:211907800-211914400	Enhancers	Brain Anterior Caudate	brain

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