The 2.0 version of rSNPBase

Variant report

Variant rs56162465
Chromosome Location chr1:211908640-211908641
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211879200-211913600 Weak transcription Right Atrium heart
2 chr1:211896400-211909000 Weak transcription Fetal Intestine Small intestine
3 chr1:211904600-211912600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
4 chr1:211904600-211913800 Enhancers Brain Inferior Temporal Lobe brain
5 chr1:211904800-211913400 Enhancers Brain Substantia Nigra brain
6 chr1:211905400-211910600 Weak transcription Primary neutrophils fromperipheralblood blood
7 chr1:211905400-211910800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr1:211905600-211910400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr1:211905800-211910400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr1:211906800-211909200 Enhancers Brain Hippocampus Middle brain
11 chr1:211906800-211912400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
12 chr1:211907000-211920800 Weak transcription Aorta Aorta
13 chr1:211907200-211909200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr1:211907200-211909800 Enhancers Stomach Mucosa stomach
15 chr1:211907600-211908800 Enhancers Rectal Mucosa Donor 31 rectum
16 chr1:211907600-211909000 Enhancers Brain Cingulate Gyrus brain
17 chr1:211907600-211909200 Flanking Active TSS A549 lung
18 chr1:211907600-211909200 Bivalent Enhancer HepG2 liver
19 chr1:211907600-211909400 Enhancers Pancreas Pancrea
20 chr1:211907600-211909800 Enhancers K562 blood
21 chr1:211907800-211910800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:211907800-211910800 Enhancers Fetal Adrenal Gland Adrenal Gland
23 chr1:211907800-211914400 Enhancers Brain Anterior Caudate brain
24 chr1:211908000-211913200 Enhancers Brain Angular Gyrus brain
25 chr1:211908200-211909600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
26 chr1:211908200-211910000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:211908200-211911200 Enhancers Breast Myoepithelial Primary Cells Breast
28 chr1:211908400-211908800 Enhancers HUES64 Cell Line embryonic stem cell
29 chr1:211908400-211908800 Enhancers Colonic Mucosa Colon
30 chr1:211908400-211908800 Enhancers Rectal Mucosa Donor 29 rectum
31 chr1:211908400-211908800 Enhancers Small Intestine intestine
32 chr1:211908400-211909000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
33 chr1:211908400-211909200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:211908400-211909200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
35 chr1:211908400-211909600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:211908400-211909600 Enhancers Cortex derived primary cultured neurospheres brain
37 chr1:211908400-211909600 Enhancers Esophagus oesophagus
38 chr1:211908400-211909800 Enhancers HUES6 Cell Line embryonic stem cell
39 chr1:211908400-211909800 Enhancers HUVEC blood vessel
40 chr1:211908400-211910000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:211908400-211910200 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:211908400-211910800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:211908400-211912800 Enhancers HMEC breast
44 chr1:211908400-211913400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
45 chr1:211908600-211909000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr1:211908600-211909200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:211908600-211909200 Enhancers Lung lung
48 chr1:211908600-211909400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
49 chr1:211908600-211909400 Enhancers Duodenum Mucosa Duodenum
50 chr1:211908600-211909400 Enhancers Ovary ovary

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Last update: Aug 31, 2015