Variant report

Variant	rs72747041
Chromosome Location	chr1:211914153-211914154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211912572..211915325-chr1:212108440..212110243,2	K562	blood:
2	chr1:211895603..211898563-chr1:211913907..211916580,2	K562	blood:

Variant related genes	Relation type
ENSG00000233626	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11119805	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11119810	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11119811	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11119812	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1126968	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12023263	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12023717	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12033577	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12046116	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12046293	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12116638	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12119787	0.82[ASN][1000 genomes]
rs12121773	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12122929	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12123889	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12126561	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12128221	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12129627	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12139336	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12144072	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12144745	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12145346	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12562933	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12566620	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17018028	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17018048	0.85[ASN][1000 genomes]
rs17042024	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1803468	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2298092	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2298095	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4951426	0.99[ASN][1000 genomes]
rs56225609	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56295475	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6673226	0.98[ASN][1000 genomes]
rs72746513	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72746521	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72746522	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72746524	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72746525	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72746529	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72746531	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72746535	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72747049	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211907000-211920800	Weak transcription	Aorta	Aorta
2	chr1:211907800-211914400	Enhancers	Brain Anterior Caudate	brain
3	chr1:211908800-211920800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:211908800-211920800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:211909200-211920200	Weak transcription	Fetal Intestine Large	intestine
6	chr1:211909200-211922200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:211909400-211920800	Weak transcription	Pancreas	Pancrea
8	chr1:211909400-211921000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr1:211909400-211921600	Weak transcription	Fetal Intestine Small	intestine
10	chr1:211909400-211939200	Weak transcription	Ovary	ovary
11	chr1:211909600-211921400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:211909600-211922000	Weak transcription	Placenta	Placenta
13	chr1:211909600-211922400	Weak transcription	HSMM	muscle
14	chr1:211909600-211923600	Weak transcription	NHDF-Ad	bronchial
15	chr1:211909600-211939400	Weak transcription	Esophagus	oesophagus
16	chr1:211909800-211915000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:211909800-211919200	Enhancers	Brain Hippocampus Middle	brain
18	chr1:211909800-211919400	Enhancers	Brain Cingulate Gyrus	brain
19	chr1:211909800-211920000	Weak transcription	Adipose Nuclei	Adipose
20	chr1:211909800-211921400	Weak transcription	HSMMtube	muscle
21	chr1:211909800-211922200	Weak transcription	HUVEC	blood vessel
22	chr1:211910000-211914400	Enhancers	Fetal Thymus	thymus
23	chr1:211910000-211915000	Weak transcription	Hela-S3	cervix
24	chr1:211910200-211915600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:211910800-211914800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr1:211911000-211914200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:211911200-211917400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:211911200-211920200	Weak transcription	Fetal Muscle Leg	muscle
29	chr1:211911200-211920800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:211911400-211920200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr1:211911600-211914400	Enhancers	Dnd41	blood
32	chr1:211911800-211914200	Enhancers	Spleen	Spleen
33	chr1:211911800-211921000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:211911800-211927400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr1:211912400-211915000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:211912400-211915600	Weak transcription	NH-A	brain
37	chr1:211912400-211920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr1:211912400-211922000	Weak transcription	Brain Germinal Matrix	brain
39	chr1:211912400-211922000	Weak transcription	Right Ventricle	heart
40	chr1:211912400-211925600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr1:211912600-211914200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr1:211912600-211920800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr1:211912600-211920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr1:211912600-211920800	Weak transcription	Fetal Stomach	stomach
45	chr1:211912600-211920800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr1:211912600-211921000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr1:211912600-211921800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr1:211912600-211964600	Weak transcription	NHEK	skin
49	chr1:211912800-211920400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:211912800-211970200	Weak transcription	HMEC	breast

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