Variant report

Variant	rs72754045
Chromosome Location	chr15:87462683-87462684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1010418	0.83[ASN][1000 genomes]
rs11073687	0.83[ASN][1000 genomes]
rs17796450	1.00[ASN][1000 genomes]
rs1865188	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55750101	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55889073	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55968056	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56371043	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59152382	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61267860	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178641	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178798	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178977	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754048	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754050	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754051	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754052	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754053	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754070	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754071	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754074	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754081	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755640	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755696	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757450	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757451	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757453	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757455	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757456	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757457	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757458	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757459	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757461	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757462	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757463	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757465	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757466	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757467	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757468	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757470	0.88[EUR][1000 genomes]
rs72757471	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757473	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757475	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449117	0.83[ASN][1000 genomes]
rs73449118	0.83[ASN][1000 genomes]
rs73449121	0.83[ASN][1000 genomes]
rs73449126	0.83[ASN][1000 genomes]
rs74025747	0.83[ASN][1000 genomes]
rs74025750	0.83[ASN][1000 genomes]
rs8023616	0.83[ASN][1000 genomes]
rs8031800	0.83[ASN][1000 genomes]
rs8032971	0.83[ASN][1000 genomes]
rs8033002	0.83[ASN][1000 genomes]
rs8033797	0.83[ASN][1000 genomes]
rs8035129	0.83[ASN][1000 genomes]
rs8037455	0.83[ASN][1000 genomes]
rs8037857	0.83[ASN][1000 genomes]
rs8037899	0.83[ASN][1000 genomes]
rs8038098	0.83[ASN][1000 genomes]
rs8038215	0.83[ASN][1000 genomes]
rs8039824	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039254	chr15:87070357-87942988	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv533986	chr15:87100872-87633926	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039005	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv542465	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv833083	chr15:87298626-87468697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1044157	chr15:87458558-88101699	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87460600-87463000	Weak transcription	Right Ventricle	heart
2	chr15:87460800-87462800	Weak transcription	Right Atrium	heart
3	chr15:87462200-87463200	Enhancers	Fetal Heart	heart
4	chr15:87462400-87463200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr15:87462400-87463400	Enhancers	Fetal Lung	lung
6	chr15:87462600-87463000	Enhancers	Fetal Brain Male	brain

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