Variant report

Variant	rs72757966
Chromosome Location	chr1:214556483-214556484
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214556095..214557675-chr1:214755498..214757303,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17730755	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17731174	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17786841	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786949	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61821383	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757948	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757949	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757957	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214519000-214557800	Weak transcription	Dnd41	blood
2	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:214524400-214574400	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:214529000-214584200	Weak transcription	Brain Anterior Caudate	brain
5	chr1:214529400-214561800	Weak transcription	Brain Angular Gyrus	brain
6	chr1:214531600-214556800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:214534000-214557000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:214537600-214577000	Weak transcription	Stomach Mucosa	stomach
9	chr1:214538000-214559400	Weak transcription	Small Intestine	intestine
10	chr1:214538200-214556600	Weak transcription	Pancreas	Pancrea
11	chr1:214539600-214561600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:214541600-214566600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:214543600-214561600	Weak transcription	Colonic Mucosa	Colon
14	chr1:214545000-214556600	Weak transcription	Gastric	stomach
15	chr1:214545000-214559400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:214545200-214556600	Weak transcription	Esophagus	oesophagus
17	chr1:214546200-214576000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:214546200-214576200	Weak transcription	Right Atrium	heart
19	chr1:214547800-214576200	Weak transcription	Fetal Heart	heart
20	chr1:214549000-214560800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr1:214549400-214561400	Strong transcription	Fetal Stomach	stomach
22	chr1:214550800-214560400	Strong transcription	Fetal Muscle Trunk	muscle
23	chr1:214551000-214558800	Strong transcription	Fetal Muscle Leg	muscle
24	chr1:214551400-214558400	Strong transcription	Fetal Intestine Large	intestine
25	chr1:214552000-214559800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:214552200-214559800	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr1:214552400-214556600	Weak transcription	Aorta	Aorta
28	chr1:214552400-214558000	Strong transcription	HUVEC	blood vessel
29	chr1:214552600-214558400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:214553000-214558600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:214553200-214558400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:214553200-214559800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:214553200-214562400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:214553400-214559600	Strong transcription	HSMM	muscle
35	chr1:214553600-214558000	Strong transcription	Left Ventricle	heart
36	chr1:214553800-214558000	Strong transcription	Ovary	ovary
37	chr1:214553800-214559800	Strong transcription	NH-A	brain
38	chr1:214554000-214558400	Strong transcription	HSMMtube	muscle
39	chr1:214554000-214562200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:214554000-214568200	Weak transcription	Liver	Liver
41	chr1:214554000-214577800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr1:214554200-214577800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr1:214554400-214557000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr1:214554600-214558000	Strong transcription	A549	lung
45	chr1:214554600-214558600	Strong transcription	Stomach Smooth Muscle	stomach
46	chr1:214554600-214559800	Strong transcription	Osteobl	bone
47	chr1:214554600-214561200	Strong transcription	Placenta	Placenta
48	chr1:214554600-214561600	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr1:214554800-214558600	Strong transcription	Fetal Intestine Small	intestine
50	chr1:214554800-214559800	Strong transcription	HMEC	breast

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