Variant report

Variant	rs17786841
Chromosome Location	chr1:214529147-214529148
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10465696	1.00[JPT][hapmap]
rs1048791	1.00[JPT][hapmap]
rs11120298	1.00[JPT][hapmap]
rs11120299	1.00[JPT][hapmap]
rs11800749	1.00[JPT][hapmap]
rs1391553	1.00[JPT][hapmap]
rs1498364	0.88[EUR][1000 genomes]
rs17022608	1.00[JPT][hapmap]
rs17730755	0.82[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17731174	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17786949	1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047445	1.00[JPT][hapmap]
rs3767842	1.00[JPT][hapmap]
rs4655244	1.00[JPT][hapmap]
rs4655330	1.00[JPT][hapmap]
rs4655332	1.00[JPT][hapmap]
rs4655333	1.00[JPT][hapmap]
rs4655334	1.00[JPT][hapmap]
rs4655336	1.00[JPT][hapmap]
rs61821383	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660335	1.00[JPT][hapmap]
rs6687629	1.00[JPT][hapmap]
rs6695148	1.00[JPT][hapmap]
rs72757948	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757949	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757957	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757965	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757966	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7412913	1.00[JPT][hapmap]
rs867444	1.00[JPT][hapmap]
rs867445	1.00[JPT][hapmap]
rs867446	1.00[JPT][hapmap]
rs904321	1.00[JPT][hapmap]
rs9430131	1.00[JPT][hapmap]
rs9430133	1.00[JPT][hapmap]
rs955920	1.00[JPT][hapmap]
rs958304	1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17786841	SYT14	cis	parietal	SCAN

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214493000-214534600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr1:214503200-214537800	Weak transcription	Gastric	stomach
3	chr1:214504600-214533200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:214507000-214529800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:214508400-214529600	Weak transcription	Pancreas	Pancrea
6	chr1:214508400-214535000	Weak transcription	Esophagus	oesophagus
7	chr1:214511400-214529400	Weak transcription	Aorta	Aorta
8	chr1:214511400-214530400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:214511400-214531200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:214512000-214537000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:214513600-214552200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:214514000-214537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:214515400-214542600	Weak transcription	Brain Substantia Nigra	brain
14	chr1:214518400-214537800	Weak transcription	Fetal Brain Male	brain
15	chr1:214519000-214533800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr1:214519000-214557800	Weak transcription	Dnd41	blood
17	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:214520400-214529400	Weak transcription	Fetal Intestine Small	intestine
19	chr1:214521200-214537600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:214521600-214531000	Weak transcription	Hela-S3	cervix
21	chr1:214522800-214552800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:214523400-214530000	Weak transcription	Colon Smooth Muscle	Colon
23	chr1:214523400-214540800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:214523800-214529400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:214523800-214529600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr1:214524400-214535400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:214524400-214574400	Weak transcription	Brain Hippocampus Middle	brain
28	chr1:214524800-214529200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:214524800-214531600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:214524800-214532200	Strong transcription	HUVEC	blood vessel
31	chr1:214524800-214534800	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr1:214524800-214535200	Strong transcription	NH-A	brain
33	chr1:214524800-214535400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:214524800-214537800	Strong transcription	NHEK	skin
35	chr1:214524800-214539200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:214525000-214530000	Weak transcription	Lung	lung
37	chr1:214525000-214534800	Strong transcription	HSMM	muscle
38	chr1:214525000-214535600	Strong transcription	NHDF-Ad	bronchial
39	chr1:214525000-214537000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:214525600-214540000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr1:214525800-214532200	Strong transcription	HMEC	breast
42	chr1:214526000-214534000	Weak transcription	Right Ventricle	heart
43	chr1:214526000-214538600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr1:214526000-214544600	Weak transcription	Spleen	Spleen
45	chr1:214526400-214537200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr1:214526400-214542400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr1:214526600-214529400	Weak transcription	Left Ventricle	heart
48	chr1:214526600-214531600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr1:214526600-214535000	Weak transcription	Fetal Heart	heart
50	chr1:214526800-214531600	Strong transcription	NHLF	lung

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