Variant report

Variant	rs7412913
Chromosome Location	chr1:214463228-214463229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214461559..214464965-chr1:214465950..214468310,3	K562	blood:
2	chr1:214460531..214463477-chr1:214488827..214490849,2	MCF-7	breast:
3	chr1:214462833..214466759-chr1:214468117..214470451,4	K562	blood:
4	chr1:214461471..214463452-chr1:214488205..214490327,2	K562	blood:
5	chr1:214453247..214457294-chr1:214460008..214465638,7	MCF-7	breast:
6	chr1:214457192..214459073-chr1:214461952..214463618,2	K562	blood:
7	chr1:214462387..214466759-chr1:214468789..214472105,4	K562	blood:

Variant related genes	Relation type
ENSG00000143499	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10465696	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10465697	1.00[ASN][1000 genomes]
rs1048791	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11120298	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11120299	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11800749	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12073421	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1391553	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1498364	1.00[ASN][1000 genomes]
rs17022608	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17730755	1.00[JPT][hapmap]
rs17731174	1.00[JPT][hapmap]
rs17786949	1.00[JPT][hapmap]
rs2047445	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35949806	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767842	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4655243	1.00[ASN][1000 genomes]
rs4655244	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4655246	0.94[CEU][hapmap]
rs4655330	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655332	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4655333	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4655334	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4655336	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55760458	1.00[ASN][1000 genomes]
rs59864830	1.00[ASN][1000 genomes]
rs6660335	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6687629	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6695148	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs867444	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs867445	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs867446	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs904321	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9308433	0.89[AMR][1000 genomes]
rs9308435	1.00[CEU][hapmap]
rs9430131	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9430133	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs955920	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958304	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214455600-214487800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:214455600-214489000	Weak transcription	Ovary	ovary
3	chr1:214456000-214469200	Weak transcription	NH-A	brain
4	chr1:214456200-214463800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:214456200-214469800	Weak transcription	Fetal Lung	lung
6	chr1:214456400-214468800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:214456400-214470000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:214456400-214491800	Weak transcription	Pancreas	Pancrea
9	chr1:214456600-214467800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:214456600-214483200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:214456800-214465000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr1:214456800-214465400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:214456800-214468800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:214456800-214470000	Weak transcription	HMEC	breast
15	chr1:214457200-214478200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr1:214458600-214470000	Weak transcription	A549	lung
17	chr1:214459200-214468200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:214459200-214469400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:214459200-214483000	Weak transcription	Liver	Liver
20	chr1:214459200-214491400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr1:214459400-214464400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr1:214459600-214468800	Weak transcription	GM12878-XiMat	blood
23	chr1:214459800-214467800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr1:214461400-214465600	Enhancers	Fetal Heart	heart
25	chr1:214461400-214475800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr1:214461600-214463600	Genic enhancers	HepG2	liver
27	chr1:214461600-214475600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr1:214461600-214483000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr1:214461800-214468800	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr1:214461800-214482800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr1:214462000-214469200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr1:214462000-214469600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr1:214462000-214469600	Weak transcription	Hela-S3	cervix
34	chr1:214462000-214471400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:214462000-214491800	Weak transcription	NHEK	skin
36	chr1:214462200-214466400	Enhancers	Fetal Intestine Small	intestine
37	chr1:214462400-214463600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
38	chr1:214462400-214463800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:214462400-214465200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:214462400-214470200	Weak transcription	HSMMtube	muscle
41	chr1:214462400-214475800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr1:214462600-214463800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr1:214462600-214464200	Enhancers	Fetal Intestine Large	intestine
44	chr1:214462600-214465400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:214462600-214483200	Weak transcription	Dnd41	blood
46	chr1:214462800-214463400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr1:214462800-214463400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
48	chr1:214462800-214463600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr1:214462800-214464000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
50	chr1:214462800-214464400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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