Variant report

Variant	rs904321
Chromosome Location	chr1:214506550-214506551
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214506018..214506945-chr1:214758248..214759072,4	MCF-7	breast:
2	chr1:214452237..214456498-chr1:214498464..214506870,12	MCF-7	breast:
3	chr1:214505285..214508273-chr1:214509081..214512875,3	K562	blood:
4	chr1:214506031..214506834-chr1:215699653..215700161,2	K562	blood:
5	chr1:214434232..214435104-chr1:214506053..214506957,2	K562	blood:
6	chr1:214505230..214508273-chr1:214509081..214512875,4	K562	blood:
7	chr1:214505527..214506582-chr1:214801187..214801906,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143499	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10465696	0.90[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465697	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048791	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120298	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120299	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120300	0.87[AMR][1000 genomes]
rs11800749	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073421	1.00[ASN][1000 genomes]
rs1391553	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498364	1.00[ASN][1000 genomes]
rs17022608	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17730755	1.00[JPT][hapmap]
rs17731174	1.00[JPT][hapmap]
rs17786949	1.00[JPT][hapmap]
rs2047445	1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35949806	1.00[ASN][1000 genomes]
rs3767842	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655243	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655244	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655246	1.00[CEU][hapmap]
rs4655330	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4655332	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655333	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655334	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4655336	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760458	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59864830	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660335	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687629	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6695148	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7412913	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs867444	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867445	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867446	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308435	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9430131	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9430133	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955920	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs958304	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214471000-214517400	Weak transcription	Fetal Kidney	kidney
2	chr1:214477400-214511000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:214482200-214510600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:214484400-214510800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:214484800-214507800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:214484800-214522000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:214485000-214513200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:214486200-214526000	Weak transcription	Psoas Muscle	Psoas
9	chr1:214487400-214509400	Strong transcription	Primary T cells from cord blood	blood
10	chr1:214487800-214510600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:214488200-214517600	Weak transcription	Brain Germinal Matrix	brain
12	chr1:214488200-214520800	Weak transcription	Hela-S3	cervix
13	chr1:214488800-214510600	Weak transcription	Fetal Brain Male	brain
14	chr1:214489400-214506600	Weak transcription	Ovary	ovary
15	chr1:214490800-214518200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:214492800-214509200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr1:214493000-214510600	Weak transcription	Aorta	Aorta
18	chr1:214493000-214519800	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:214493000-214534600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr1:214493400-214508600	Strong transcription	HepG2	liver
21	chr1:214493800-214519000	Weak transcription	Fetal Thymus	thymus
22	chr1:214495400-214507400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr1:214495600-214510400	Weak transcription	NH-A	brain
24	chr1:214497800-214509000	Strong transcription	Dnd41	blood
25	chr1:214500000-214508800	Strong transcription	Fetal Intestine Small	intestine
26	chr1:214500200-214507200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr1:214500200-214510000	Weak transcription	GM12878-XiMat	blood
28	chr1:214501800-214512000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr1:214501800-214517800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr1:214502000-214506800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:214502200-214506600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr1:214502600-214510800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr1:214502600-214515000	Weak transcription	Brain Angular Gyrus	brain
34	chr1:214502800-214506600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:214502800-214506600	Weak transcription	Osteobl	bone
36	chr1:214502800-214510400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:214503000-214506600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr1:214503000-214506600	Weak transcription	HSMMtube	muscle
39	chr1:214503200-214506600	Weak transcription	NHLF	lung
40	chr1:214503200-214507400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr1:214503200-214510600	Weak transcription	NHDF-Ad	bronchial
42	chr1:214503200-214510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr1:214503200-214537800	Weak transcription	Gastric	stomach
44	chr1:214503400-214507400	Weak transcription	Lung	lung
45	chr1:214503400-214507600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr1:214503400-214510200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr1:214503400-214513000	Weak transcription	K562	blood
48	chr1:214503400-214518400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr1:214503600-214511000	Weak transcription	Fetal Brain Female	brain
50	chr1:214503600-214511200	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links