Variant report

Variant	rs4655333
Chromosome Location	chr1:214493549-214493550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:214451643..214456693-chr1:214488650..214497237,17	MCF-7	breast:
2	chr1:214452540..214454471-chr1:214492081..214493815,2	K562	blood:
3	chr1:214487556..214489408-chr1:214491187..214493754,2	K562	blood:
4	chr1:214491130..214494829-chr1:214496540..214499830,3	K562	blood:
5	chr1:214474368..214476686-chr1:214492540..214494376,2	K562	blood:
6	chr1:214491270..214493161-chr1:214493280..214496080,3	K562	blood:
7	chr1:214477573..214480813-chr1:214491684..214493697,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143499	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10465696	0.90[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465697	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048791	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120298	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120299	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120300	0.89[MEX][hapmap];0.86[AMR][1000 genomes]
rs11800749	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073421	1.00[ASN][1000 genomes]
rs1391553	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498364	1.00[ASN][1000 genomes]
rs17022608	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17730755	1.00[JPT][hapmap]
rs17731174	1.00[JPT][hapmap]
rs17786949	1.00[JPT][hapmap]
rs2047445	1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35949806	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3767842	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655243	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655244	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655246	1.00[CEU][hapmap]
rs4655330	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4655332	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655334	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4655336	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59864830	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660335	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687629	0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6695148	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7412913	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs867444	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867445	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867446	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904321	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308433	0.89[MEX][hapmap]
rs9308435	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9430131	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9430133	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955920	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs958304	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4655333	SYT14	cis	parietal	SCAN
rs4655333	S100A13	trans	lymphoblastoid	seeQTL

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214471000-214517400	Weak transcription	Fetal Kidney	kidney
2	chr1:214477400-214506400	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:214477400-214506400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:214477400-214511000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:214479000-214503000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:214482200-214510600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:214483600-214501600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:214484400-214499800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:214484400-214510800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:214484800-214501800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:214484800-214507800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:214484800-214522000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr1:214485000-214506400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:214485000-214513200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:214485600-214499600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:214485800-214499600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:214486200-214526000	Weak transcription	Psoas Muscle	Psoas
18	chr1:214487400-214502600	Weak transcription	Colonic Mucosa	Colon
19	chr1:214487400-214509400	Strong transcription	Primary T cells from cord blood	blood
20	chr1:214487600-214497400	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr1:214487600-214506200	Weak transcription	Small Intestine	intestine
22	chr1:214487800-214494000	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr1:214487800-214510600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:214488000-214496400	Strong transcription	Dnd41	blood
25	chr1:214488000-214497800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:214488200-214493600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr1:214488200-214499000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr1:214488200-214500400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:214488200-214517600	Weak transcription	Brain Germinal Matrix	brain
30	chr1:214488200-214520800	Weak transcription	Hela-S3	cervix
31	chr1:214488400-214493800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr1:214488400-214494000	Strong transcription	Fetal Muscle Leg	muscle
33	chr1:214488800-214497800	Strong transcription	Fetal Stomach	stomach
34	chr1:214488800-214510600	Weak transcription	Fetal Brain Male	brain
35	chr1:214489400-214506200	Weak transcription	A549	lung
36	chr1:214489400-214506600	Weak transcription	Ovary	ovary
37	chr1:214490200-214501800	Weak transcription	NHLF	lung
38	chr1:214490200-214502400	Weak transcription	Placenta	Placenta
39	chr1:214490400-214502400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:214490600-214496400	Strong transcription	Primary B cells from cord blood	blood
41	chr1:214490800-214493800	Strong transcription	Fetal Lung	lung
42	chr1:214490800-214518200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr1:214491000-214503400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr1:214491200-214495800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:214491200-214497000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr1:214491400-214493800	Strong transcription	Fetal Thymus	thymus
47	chr1:214491600-214506000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr1:214491800-214495400	Strong transcription	NHEK	skin
49	chr1:214491800-214500400	Weak transcription	HUVEC	blood vessel
50	chr1:214492000-214494000	Strong transcription	Fetal Muscle Trunk	muscle

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