Variant report

Variant	rs72759627
Chromosome Location	chr9:101086122-101086123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101085788..101088232-chr9:101098487..101101467,2	K562	blood:
2	chr9:101077814..101081761-chr9:101084202..101087593,3	K562	blood:
3	chr9:101076038..101079314-chr9:101086093..101088880,3	K562	blood:
4	chr9:101083842..101086347-chr9:101087149..101089530,2	K562	blood:
5	chr9:101085806..101088798-chr9:101299467..101301907,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10125457	1.00[ASN][1000 genomes]
rs28564647	0.84[ASN][1000 genomes]
rs28653687	1.00[ASN][1000 genomes]
rs7043006	0.84[ASN][1000 genomes]
rs72759625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72759628	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72759629	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72759636	0.83[AMR][1000 genomes]
rs72759646	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7849196	1.00[ASN][1000 genomes]
rs7849698	1.00[ASN][1000 genomes]
rs7863839	1.00[ASN][1000 genomes]
rs7871796	1.00[ASN][1000 genomes]
rs7875502	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101078400-101088800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:101082000-101086400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:101084000-101086400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:101085200-101086200	Enhancers	Spleen	Spleen
5	chr9:101085400-101086400	Enhancers	Pancreas	Pancrea
6	chr9:101085400-101086600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr9:101085400-101087200	Enhancers	NHLF	lung
8	chr9:101085400-101087600	Enhancers	HUVEC	blood vessel
9	chr9:101085600-101087200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:101085600-101087200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:101085600-101087200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:101085600-101087400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:101085600-101087400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:101085600-101087400	Enhancers	HMEC	breast
15	chr9:101085600-101089000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:101085600-101093800	Weak transcription	Lung	lung
17	chr9:101085800-101086600	Enhancers	Stomach Smooth Muscle	stomach
18	chr9:101085800-101087200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:101085800-101087200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:101085800-101087200	Enhancers	Right Atrium	heart
21	chr9:101085800-101087400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:101085800-101087400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr9:101085800-101087400	Enhancers	NHDF-Ad	bronchial
24	chr9:101086000-101086800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:101086000-101087000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:101086000-101087200	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr9:101086000-101087200	Enhancers	Fetal Muscle Trunk	muscle
28	chr9:101086000-101087200	Enhancers	HSMM	muscle
29	chr9:101086000-101087400	Enhancers	NH-A	brain
30	chr9:101086000-101087400	Enhancers	Osteobl	bone
31	chr9:101086000-101089600	Weak transcription	Right Ventricle	heart

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