Variant report

Variant	rs7871796
Chromosome Location	chr9:101097737-101097738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10125457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985909	0.90[EUR][1000 genomes]
rs16915331	1.00[CHB][hapmap]
rs28564647	0.84[ASN][1000 genomes]
rs28653687	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043006	0.84[ASN][1000 genomes]
rs72759627	1.00[ASN][1000 genomes]
rs72759635	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72759636	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72759646	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7849196	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7849698	1.00[ASN][1000 genomes]
rs7863839	1.00[ASN][1000 genomes]
rs7871923	1.00[CHB][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7875502	0.92[ASN][1000 genomes]
rs9886874	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101090400-101098400	Enhancers	HUVEC	blood vessel
2	chr9:101094400-101104400	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101095000-101098400	Enhancers	K562	blood
4	chr9:101095400-101102800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:101096600-101097800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:101097200-101097800	Enhancers	Fetal Intestine Small	intestine
7	chr9:101097600-101119600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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