Variant report

Variant	rs72759636
Chromosome Location	chr9:101097120-101097121
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10125457	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10985909	0.90[EUR][1000 genomes]
rs28653687	1.00[EUR][1000 genomes]
rs72759625	0.83[AMR][1000 genomes]
rs72759627	0.83[AMR][1000 genomes]
rs72759635	1.00[EUR][1000 genomes]
rs72759646	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72759648	0.85[AMR][1000 genomes]
rs7871796	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871923	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101090400-101098400	Enhancers	HUVEC	blood vessel
2	chr9:101094400-101104400	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101095000-101098400	Enhancers	K562	blood
4	chr9:101095400-101097400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:101095400-101102800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:101095800-101097400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:101095800-101097400	Enhancers	HMEC	breast
8	chr9:101095800-101097400	Enhancers	NHEK	skin
9	chr9:101096000-101097200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:101096000-101097200	Enhancers	NHDF-Ad	bronchial
11	chr9:101096200-101097400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:101096600-101097600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:101096600-101097800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:101096800-101097200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:101097000-101097400	Enhancers	NH-A	brain
16	chr9:101097000-101097600	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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