Variant report

Variant	rs72786287
Chromosome Location	chr5:111298297-111298298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111298296..111299841-chr5:111496577..111498079,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238363	Chromatin interaction
ENSG00000224032	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs152291	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs154082	0.84[AMR][1000 genomes]
rs154083	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs154092	0.92[EUR][1000 genomes]
rs154142	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs154143	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1644466	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1677320	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs168876	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs171738	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs173583	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs173900	0.80[EUR][1000 genomes]
rs248745	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs248746	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs248747	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs256036	0.92[EUR][1000 genomes]
rs256037	0.89[EUR][1000 genomes]
rs256046	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs26437	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs26571	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs26572	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs26573	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2913546	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34929	0.85[EUR][1000 genomes]
rs388450	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs458532	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55684472	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55954860	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56079425	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs696829	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs698403	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72786291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72786292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72786301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72788210	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72788217	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111293200-111298400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:111296000-111298600	Enhancers	Fetal Heart	heart
3	chr5:111297200-111299600	Enhancers	Primary B cells from cord blood	blood
4	chr5:111297400-111299200	Enhancers	Primary B cells from peripheral blood	blood
5	chr5:111298200-111303600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:111298200-111303600	Weak transcription	Osteobl	bone

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