Variant report

Variant	rs173900
Chromosome Location	chr5:111320587-111320588
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs152291	0.85[EUR][1000 genomes]
rs154083	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs154092	0.83[EUR][1000 genomes]
rs154142	0.80[EUR][1000 genomes]
rs154143	0.85[EUR][1000 genomes]
rs1644466	0.83[EUR][1000 genomes]
rs1677320	0.87[EUR][1000 genomes]
rs168876	0.83[EUR][1000 genomes]
rs171738	0.83[EUR][1000 genomes]
rs173583	0.83[EUR][1000 genomes]
rs248745	0.83[EUR][1000 genomes]
rs248746	0.83[EUR][1000 genomes]
rs248747	0.83[EUR][1000 genomes]
rs255927	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs256036	0.83[EUR][1000 genomes]
rs256037	0.80[EUR][1000 genomes]
rs256046	0.87[EUR][1000 genomes]
rs26437	0.87[EUR][1000 genomes]
rs26553	0.84[ASN][1000 genomes]
rs26571	0.83[EUR][1000 genomes]
rs26572	0.83[EUR][1000 genomes]
rs26573	0.83[EUR][1000 genomes]
rs27374	0.84[ASN][1000 genomes]
rs28162	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2913546	0.87[EUR][1000 genomes]
rs30431	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs34925	1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs34929	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34932	0.94[ASN][1000 genomes]
rs388450	0.83[EUR][1000 genomes]
rs458532	0.83[EUR][1000 genomes]
rs518937	0.81[ASN][1000 genomes]
rs535049	1.00[JPT][hapmap]
rs55684472	0.85[EUR][1000 genomes]
rs55954860	0.83[EUR][1000 genomes]
rs56079425	0.85[EUR][1000 genomes]
rs587666	0.84[ASN][1000 genomes]
rs6594560	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs696829	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs698403	0.87[EUR][1000 genomes]
rs72786287	0.80[EUR][1000 genomes]
rs72786291	0.80[EUR][1000 genomes]
rs72786292	0.80[EUR][1000 genomes]
rs72786301	0.80[EUR][1000 genomes]
rs72788210	0.85[EUR][1000 genomes]
rs72788217	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111318600-111320800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:111319000-111320600	Enhancers	NHLF	lung
3	chr5:111319000-111320600	Enhancers	Osteobl	bone
4	chr5:111319000-111320800	Enhancers	HSMM	muscle
5	chr5:111319200-111320600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:111319200-111320800	Enhancers	NHDF-Ad	bronchial
7	chr5:111319200-111321000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:111319200-111321000	Enhancers	NH-A	brain
9	chr5:111319400-111320600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:111319400-111321200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:111319600-111320600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:111319800-111320600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr5:111320000-111320800	Weak transcription	Fetal Kidney	kidney
14	chr5:111320000-111320800	Enhancers	Left Ventricle	heart
15	chr5:111320000-111320800	Enhancers	HSMMtube	muscle
16	chr5:111320200-111321000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:111320400-111320800	Enhancers	Pancreatic Islets	Pancreatic Islet

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