Variant report

Variant	rs587666
Chromosome Location	chr5:111290221-111290222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10515437	1.00[EUR][1000 genomes]
rs17133895	1.00[EUR][1000 genomes]
rs17133896	1.00[EUR][1000 genomes]
rs173900	0.84[ASN][1000 genomes]
rs17494914	0.83[EUR][1000 genomes]
rs17496945	1.00[EUR][1000 genomes]
rs17560784	0.83[EUR][1000 genomes]
rs255927	0.92[ASN][1000 genomes]
rs26553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27374	0.90[ASN][1000 genomes]
rs28162	0.92[ASN][1000 genomes]
rs30431	0.92[ASN][1000 genomes]
rs34925	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34929	1.00[ASN][1000 genomes]
rs518937	0.81[ASN][1000 genomes]
rs535049	0.93[ASN][1000 genomes]
rs56109161	0.83[EUR][1000 genomes]
rs56198712	1.00[EUR][1000 genomes]
rs58568414	1.00[EUR][1000 genomes]
rs59876317	0.83[EUR][1000 genomes]
rs61335870	1.00[EUR][1000 genomes]
rs61430978	1.00[EUR][1000 genomes]
rs6594560	1.00[ASN][1000 genomes]
rs664517	0.95[ASN][1000 genomes]
rs6883284	0.83[EUR][1000 genomes]
rs73787730	1.00[EUR][1000 genomes]
rs73787733	1.00[EUR][1000 genomes]
rs73787734	1.00[EUR][1000 genomes]
rs73787736	1.00[EUR][1000 genomes]
rs73787738	1.00[EUR][1000 genomes]
rs73787739	1.00[EUR][1000 genomes]
rs73787740	1.00[EUR][1000 genomes]
rs73789519	0.83[EUR][1000 genomes]
rs7703429	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111285000-111290600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:111285000-111290600	Weak transcription	Adipose Nuclei	Adipose
3	chr5:111285800-111291600	Enhancers	Osteobl	bone
4	chr5:111286800-111290600	Weak transcription	NHEK	skin
5	chr5:111287600-111291600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:111288000-111291400	Enhancers	NH-A	brain
7	chr5:111288200-111291000	Enhancers	NHDF-Ad	bronchial
8	chr5:111288400-111291000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:111288400-111292000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:111288600-111291600	Enhancers	HSMM	muscle
11	chr5:111288800-111291200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:111289400-111290400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:111289400-111290600	Enhancers	HSMMtube	muscle
14	chr5:111289400-111291200	Enhancers	Primary B cells from peripheral blood	blood
15	chr5:111289600-111290600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:111289600-111295800	Weak transcription	NHLF	lung
17	chr5:111290000-111291000	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr5:111290000-111291400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:111290200-111290400	Enhancers	GM12878-XiMat	blood
20	chr5:111290200-111290800	Enhancers	Dnd41	blood
21	chr5:111290200-111291000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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