Variant report

Variant	rs34925
Chromosome Location	chr5:111316807-111316808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111002125..111004615-chr5:111314425..111317158,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10515437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17133895	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17133896	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17133978	0.87[AMR][1000 genomes]
rs173900	0.90[ASN][1000 genomes]
rs17494914	0.83[EUR][1000 genomes]
rs17496945	1.00[EUR][1000 genomes]
rs17560784	0.83[EUR][1000 genomes]
rs255927	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs26553	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs27374	0.90[ASN][1000 genomes]
rs28162	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs30431	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34929	0.95[ASN][1000 genomes]
rs34932	0.85[ASN][1000 genomes]
rs535049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs56109161	0.83[EUR][1000 genomes]
rs56198712	1.00[EUR][1000 genomes]
rs58568414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs587666	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59876317	0.83[EUR][1000 genomes]
rs61335870	1.00[EUR][1000 genomes]
rs61430978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6594560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs664517	0.90[ASN][1000 genomes]
rs6883284	0.83[EUR][1000 genomes]
rs73787730	1.00[EUR][1000 genomes]
rs73787733	1.00[EUR][1000 genomes]
rs73787734	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73787736	1.00[EUR][1000 genomes]
rs73787738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73787739	1.00[EUR][1000 genomes]
rs73787740	1.00[EUR][1000 genomes]
rs73789519	0.83[EUR][1000 genomes]
rs7703429	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111309800-111319600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:111311200-111320000	Weak transcription	Left Ventricle	heart
3	chr5:111311200-111320000	Weak transcription	Right Ventricle	heart
4	chr5:111312800-111319000	Weak transcription	NHLF	lung
5	chr5:111313200-111318600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:111313800-111319000	Weak transcription	Osteobl	bone
7	chr5:111314000-111319400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:111315600-111319200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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