Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17133895	1.00[CEU][hapmap]
rs17133896	1.00[CEU][hapmap]
rs173900	0.84[ASN][1000 genomes]
rs17496945	1.00[AMR][1000 genomes]
rs255927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs26553	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28162	0.92[ASN][1000 genomes]
rs30431	0.92[ASN][1000 genomes]
rs34925	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs34929	0.90[ASN][1000 genomes]
rs34932	1.00[AMR][1000 genomes]
rs535049	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56198712	1.00[AMR][1000 genomes]
rs587666	0.90[ASN][1000 genomes]
rs61335870	1.00[AMR][1000 genomes]
rs6594560	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs664517	0.85[ASN][1000 genomes]
rs73787730	1.00[AMR][1000 genomes]
rs73787733	1.00[AMR][1000 genomes]
rs73787736	1.00[AMR][1000 genomes]
rs73787739	1.00[AMR][1000 genomes]
rs73787740	1.00[AMR][1000 genomes]
rs73787741	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv2829846	chr5:111341445-111435769	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111347200-111351000	Enhancers	Fetal Lung	lung
2	chr5:111347200-111351200	Enhancers	Colon Smooth Muscle	Colon
3	chr5:111349200-111351200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:111349200-111351200	Enhancers	NHDF-Ad	bronchial
5	chr5:111350000-111351400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:111350400-111351000	Enhancers	Fetal Brain Male	brain
7	chr5:111350400-111351000	Enhancers	Rectal Smooth Muscle	rectum
8	chr5:111350400-111351200	Enhancers	Osteobl	bone
9	chr5:111350600-111351200	Enhancers	Fetal Brain Female	brain
10	chr5:111350800-111351000	Enhancers	Brain Germinal Matrix	brain
11	chr5:111350800-111351000	Enhancers	Stomach Smooth Muscle	stomach
12	chr5:111350800-111351200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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