Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10515437	1.00[AMR][1000 genomes]
rs17133895	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes]
rs17133896	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes]
rs17133978	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs173900	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs255927	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs26553	0.92[ASN][1000 genomes]
rs27374	0.92[ASN][1000 genomes]
rs28162	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34925	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34929	0.92[ASN][1000 genomes]
rs34932	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs535049	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs58568414	1.00[AMR][1000 genomes]
rs587666	0.92[ASN][1000 genomes]
rs61430978	1.00[AMR][1000 genomes]
rs6594560	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[ASN][1000 genomes]
rs664517	0.87[ASN][1000 genomes]
rs73787734	1.00[AMR][1000 genomes]
rs73787738	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv2829846	chr5:111341445-111435769	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111341600-111349200	Weak transcription	Adipose Nuclei	Adipose
2	chr5:111342000-111346400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:111342800-111347600	Weak transcription	NHLF	lung
4	chr5:111342800-111347800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:111343000-111346200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:111343000-111347600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:111343000-111347600	Weak transcription	NHDF-Ad	bronchial
8	chr5:111343000-111348000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:111343200-111346600	Weak transcription	Fetal Stomach	stomach
10	chr5:111343200-111347400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:111343200-111347600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:111343200-111347600	Weak transcription	NH-A	brain
13	chr5:111343600-111349400	Weak transcription	Osteobl	bone

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