Variant report
| Variant | rs34932 |
|---|---|
| Chromosome Location | chr5:111321508-111321509 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs17133895 | 1.00[CEU][hapmap];0.85[YRI][hapmap] |
| rs17133896 | 1.00[CEU][hapmap];0.85[YRI][hapmap] |
| rs173900 | 0.94[ASN][1000 genomes] |
| rs17494914 | 0.83[EUR][1000 genomes] |
| rs17496945 | 1.00[AMR][1000 genomes] |
| rs17560784 | 0.83[EUR][1000 genomes] |
| rs255927 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs26553 | 0.83[AMR][1000 genomes] |
| rs27374 | 1.00[AMR][1000 genomes] |
| rs28162 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs30431 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34925 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs41408646 | 0.85[YRI][hapmap] |
| rs518937 | 0.85[ASN][1000 genomes] |
| rs535049 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes] |
| rs56109161 | 0.83[EUR][1000 genomes] |
| rs56198712 | 1.00[AMR][1000 genomes] |
| rs59876317 | 0.83[EUR][1000 genomes] |
| rs61335870 | 1.00[AMR][1000 genomes] |
| rs6594560 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes] |
| rs6883284 | 0.83[EUR][1000 genomes] |
| rs73787730 | 1.00[AMR][1000 genomes] |
| rs73787733 | 1.00[AMR][1000 genomes] |
| rs73787736 | 1.00[AMR][1000 genomes] |
| rs73787739 | 1.00[AMR][1000 genomes] |
| rs73787740 | 1.00[AMR][1000 genomes] |
| rs73787741 | 1.00[AMR][1000 genomes] |
| rs73789519 | 0.83[EUR][1000 genomes] |
| rs7703429 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599367 | chr5:110924280-111602713 | Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs34932 | HBG2 | trans | brain | seeQTL |
| rs34932 | HBG1 | trans | brain | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:111320800-111321600 | Enhancers | Fetal Kidney | kidney |
