Variant report

Variant	rs17133895
Chromosome Location	chr5:111271496-111271497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr5:111271454-111271944	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
NREP-AS1	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10515437	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133896	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17133978	0.87[AMR][1000 genomes]
rs17494914	0.83[EUR][1000 genomes]
rs17496945	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17560784	0.83[EUR][1000 genomes]
rs255927	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[AMR][1000 genomes]
rs26553	1.00[EUR][1000 genomes]
rs28162	0.87[AMR][1000 genomes]
rs30431	1.00[AMR][1000 genomes]
rs34925	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs535049	1.00[CEU][hapmap]
rs56109161	0.83[EUR][1000 genomes]
rs56198712	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58568414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587666	1.00[EUR][1000 genomes]
rs59876317	0.83[EUR][1000 genomes]
rs61335870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61430978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6594560	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs6883284	0.83[EUR][1000 genomes]
rs73787730	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787733	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787734	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787736	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787739	1.00[EUR][1000 genomes]
rs73787740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787741	1.00[ASN][1000 genomes]
rs73789519	0.83[EUR][1000 genomes]
rs7703429	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111267200-111278600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:111268800-111271600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:111268800-111271600	Weak transcription	NHEK	skin
4	chr5:111269000-111271600	Weak transcription	NHLF	lung
5	chr5:111269000-111272800	Weak transcription	NH-A	brain
6	chr5:111269000-111278000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:111269200-111278000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:111269400-111271600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:111269400-111277400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:111269400-111277400	Weak transcription	NHDF-Ad	bronchial
11	chr5:111271000-111272200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:111271200-111271600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:111271200-111274000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:111271400-111273800	Enhancers	Osteobl	bone
15	chr5:111271400-111274200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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