Variant report

Variant	rs73787738
Chromosome Location	chr5:111268458-111268459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10515437	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17133978	0.87[AMR][1000 genomes]
rs17494914	0.83[EUR][1000 genomes]
rs17496945	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17560784	0.83[EUR][1000 genomes]
rs255927	0.87[AMR][1000 genomes]
rs26553	1.00[EUR][1000 genomes]
rs28162	0.87[AMR][1000 genomes]
rs30431	1.00[AMR][1000 genomes]
rs34925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56109161	0.83[EUR][1000 genomes]
rs56198712	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58568414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587666	1.00[EUR][1000 genomes]
rs59876317	0.83[EUR][1000 genomes]
rs61335870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61430978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883284	0.83[EUR][1000 genomes]
rs73787730	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787733	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787734	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787736	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787739	1.00[EUR][1000 genomes]
rs73787740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73787741	1.00[ASN][1000 genomes]
rs73789519	0.83[EUR][1000 genomes]
rs7703429	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111262400-111269400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:111262400-111269400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:111262400-111269400	Enhancers	NHDF-Ad	bronchial
4	chr5:111262600-111269000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:111262600-111269400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:111263000-111269200	Enhancers	HSMM	muscle
7	chr5:111265000-111269000	Enhancers	Hela-S3	cervix
8	chr5:111265000-111269000	Enhancers	NH-A	brain
9	chr5:111265200-111270400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:111265600-111270000	Enhancers	Fetal Heart	heart
11	chr5:111265800-111269600	Weak transcription	Aorta	Aorta
12	chr5:111267200-111278600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:111267800-111269000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:111268200-111268800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:111268400-111268600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:111268400-111268600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr5:111268400-111268800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:111268400-111268800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:111268400-111268800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr5:111268400-111268800	Enhancers	Fetal Muscle Leg	muscle
21	chr5:111268400-111268800	Enhancers	Left Ventricle	heart
22	chr5:111268400-111268800	Enhancers	Psoas Muscle	Psoas
23	chr5:111268400-111268800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr5:111268400-111268800	Flanking Active TSS	HSMMtube	muscle
25	chr5:111268400-111268800	Enhancers	NHEK	skin
26	chr5:111268400-111268800	Flanking Active TSS	Osteobl	bone
27	chr5:111268400-111269000	Enhancers	Adipose Nuclei	Adipose
28	chr5:111268400-111269000	Enhancers	Colon Smooth Muscle	Colon
29	chr5:111268400-111269000	Enhancers	Right Ventricle	heart
30	chr5:111268400-111269000	Enhancers	NHLF	lung
31	chr5:111268400-111269200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr5:111268400-111269200	Enhancers	Stomach Smooth Muscle	stomach
33	chr5:111268400-111269400	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links