Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111298296..111299841-chr5:111496577..111498079,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224032	Chromatin interaction
ENSG00000238363	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17133895	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs17133896	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs173900	0.84[ASN][1000 genomes]
rs17496945	0.83[AMR][1000 genomes]
rs255927	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[ASN][1000 genomes]
rs26553	1.00[ASN][1000 genomes]
rs27374	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28162	0.92[ASN][1000 genomes]
rs30431	0.92[ASN][1000 genomes]
rs34925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs34929	1.00[ASN][1000 genomes]
rs34932	0.83[AMR][1000 genomes]
rs518937	0.81[ASN][1000 genomes]
rs535049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs56198712	0.83[AMR][1000 genomes]
rs587666	1.00[ASN][1000 genomes]
rs61335870	0.83[AMR][1000 genomes]
rs664517	0.95[ASN][1000 genomes]
rs73787730	0.83[AMR][1000 genomes]
rs73787733	0.83[AMR][1000 genomes]
rs73787736	0.83[AMR][1000 genomes]
rs73787739	0.83[AMR][1000 genomes]
rs73787740	0.83[AMR][1000 genomes]
rs73787741	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111297200-111299600	Enhancers	Primary B cells from cord blood	blood
2	chr5:111298200-111303600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:111298200-111303600	Weak transcription	Osteobl	bone
4	chr5:111298400-111303800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:111299000-111300200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:111299200-111299400	Enhancers	GM12878-XiMat	blood

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