Variant report

Variant	rs72788217
Chromosome Location	chr5:111338296-111338297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111338145..111340158-chr5:111345203..111347809,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs152291	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs154082	0.84[AMR][1000 genomes]
rs154083	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs154092	0.97[EUR][1000 genomes]
rs154142	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs154143	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1644466	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1677320	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs168876	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs171738	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs173583	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs173900	0.85[EUR][1000 genomes]
rs185345	0.83[EUR][1000 genomes]
rs2201415	1.00[AFR][1000 genomes]
rs248745	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs248746	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs248747	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs256036	0.97[EUR][1000 genomes]
rs256037	0.94[EUR][1000 genomes]
rs256046	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs26437	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs26571	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs26572	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs26573	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2913546	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34929	0.80[EUR][1000 genomes]
rs388450	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs458532	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55684472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55818288	1.00[AFR][1000 genomes]
rs55931388	1.00[AFR][1000 genomes]
rs55948494	1.00[AFR][1000 genomes]
rs55954860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56079425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56266887	1.00[AFR][1000 genomes]
rs696829	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs698403	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72786287	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72786291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72786292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72786301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72788210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111331600-111338400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr5:111334800-111339400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:111334800-111341000	Weak transcription	Psoas Muscle	Psoas
4	chr5:111335000-111340200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:111335000-111340200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:111335200-111340000	Weak transcription	HMEC	breast
7	chr5:111335200-111340200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:111335400-111340200	Weak transcription	HSMMtube	muscle
9	chr5:111335800-111339800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:111336000-111340000	Weak transcription	HSMM	muscle
11	chr5:111336000-111340200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:111336200-111339200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:111336400-111339600	Weak transcription	Osteobl	bone
14	chr5:111337000-111338400	Enhancers	NH-A	brain
15	chr5:111337200-111339000	Weak transcription	NHDF-Ad	bronchial
16	chr5:111337200-111342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:111337800-111338400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:111337800-111338600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:111338000-111338400	Enhancers	NHLF	lung
20	chr5:111338000-111343000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:111338200-111340200	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links