Variant report

Variant	rs55948494
Chromosome Location	chr5:111189290-111189291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2201415	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4602684	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55684472	1.00[AFR][1000 genomes]
rs55768049	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55818288	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55931388	1.00[AFR][1000 genomes]
rs55954860	1.00[AFR][1000 genomes]
rs55964607	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56079425	1.00[AFR][1000 genomes]
rs56266887	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72786291	1.00[AFR][1000 genomes]
rs72786292	1.00[AFR][1000 genomes]
rs72786301	1.00[AFR][1000 genomes]
rs72788210	1.00[AFR][1000 genomes]
rs72788217	1.00[AFR][1000 genomes]
rs7736253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111183000-111189400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:111184400-111189400	Weak transcription	Fetal Brain Female	brain
3	chr5:111184400-111195200	Weak transcription	Psoas Muscle	Psoas
4	chr5:111184600-111190800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:111184800-111191200	Weak transcription	Fetal Stomach	stomach
6	chr5:111185000-111189400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:111187200-111193400	Enhancers	Fetal Lung	lung
8	chr5:111188200-111189400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:111188600-111189400	Enhancers	Dnd41	blood
10	chr5:111188800-111190400	Enhancers	Primary B cells from cord blood	blood
11	chr5:111188800-111192000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:111189200-111190200	Enhancers	Fetal Thymus	thymus
13	chr5:111189200-111190400	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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