Variant report

Variant	rs55931388
Chromosome Location	chr5:111281507-111281508
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2201415	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs55684472	1.00[AFR][1000 genomes]
rs55818288	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs55948494	1.00[AFR][1000 genomes]
rs55954860	1.00[AFR][1000 genomes]
rs56079425	1.00[AFR][1000 genomes]
rs56266887	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72786291	1.00[AFR][1000 genomes]
rs72786292	1.00[AFR][1000 genomes]
rs72786301	1.00[AFR][1000 genomes]
rs72788210	1.00[AFR][1000 genomes]
rs72788217	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111279200-111281600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:111279400-111283200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:111279400-111283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:111279400-111283400	Weak transcription	NHLF	lung
5	chr5:111279400-111283800	Weak transcription	HMEC	breast
6	chr5:111279400-111283800	Weak transcription	NHEK	skin
7	chr5:111280800-111281800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:111281000-111282000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:111281200-111281800	Enhancers	HSMMtube	muscle
10	chr5:111281400-111281800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:111281400-111281800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:111281400-111281800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr5:111281400-111281800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:111281400-111281800	Enhancers	HSMM	muscle
15	chr5:111281400-111281800	Enhancers	NH-A	brain
16	chr5:111281400-111281800	Enhancers	NHDF-Ad	bronchial
17	chr5:111281400-111281800	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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