Variant report

Variant	rs55818288
Chromosome Location	chr5:111246108-111246109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2201415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4602684	0.85[EUR][1000 genomes]
rs55684472	1.00[AFR][1000 genomes]
rs55768049	0.85[EUR][1000 genomes]
rs55931388	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs55948494	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55954860	1.00[AFR][1000 genomes]
rs55964607	0.85[EUR][1000 genomes]
rs56079425	1.00[AFR][1000 genomes]
rs56266887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72786291	1.00[AFR][1000 genomes]
rs72786292	1.00[AFR][1000 genomes]
rs72786301	1.00[AFR][1000 genomes]
rs72788210	1.00[AFR][1000 genomes]
rs72788217	1.00[AFR][1000 genomes]
rs7736253	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111245600-111246400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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