Variant report

Variant	rs72790824
Chromosome Location	chr16:64892602-64892603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1428763	1.00[AMR][1000 genomes]
rs1560191	1.00[AMR][1000 genomes]
rs72790845	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv457512	chr16:64887354-64935433	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv572900	chr16:64887354-64935433	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64891800-64898000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr16:64892400-64897800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr16:64892400-64897800	Weak transcription	HSMMtube	muscle
4	chr16:64892600-64897600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr16:64892600-64897600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr16:64892600-64897600	Weak transcription	NH-A	brain
7	chr16:64892600-64897800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr16:64892600-64897800	Weak transcription	Osteobl	bone
9	chr16:64892600-64898200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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