Variant report

Variant	rs72790845
Chromosome Location	chr16:64925495-64925496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1428763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1560191	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72790824	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv457512	chr16:64887354-64935433	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv572900	chr16:64887354-64935433	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64900800-64934400	Weak transcription	Fetal Brain Male	brain
2	chr16:64920600-64925800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr16:64922000-64926600	Weak transcription	Fetal Lung	lung
4	chr16:64925000-64927000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr16:64925200-64926600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr16:64925200-64927000	Enhancers	Osteobl	bone
7	chr16:64925200-64927200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr16:64925200-64927800	Enhancers	NH-A	brain
9	chr16:64925400-64927000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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